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sgkit-dev / sgkit

Scalable genetics toolkit
https://sgkit-dev.github.io/sgkit
Apache License 2.0
235 stars 32 forks source link

Deprecate VCF write functions #1245

Closed tomwhite closed 1 month ago

tomwhite commented 3 months ago

Once vcztools has been released we should deprecate sgkit's write_vcf and zarr_to_vcf functions for writing VCF.

tomwhite commented 3 months ago

We could also add a link to vcftools view to the documentation for display_genotypes as a suggested alternative.

tomwhite commented 1 month ago

Superceded by #1264