Simplifying / updating compression analysis and figures

sgkit-dev / vcf-zarr-publication

Manuscript and associated scripts for vcf-zarr publication

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Closed shz9 closed 3 months ago

shz9 commented 3 months ago

Updates include:

Updated/simplified figures based on discussion in #108 .
Now user can run compression benchmarks for shuffle and chunksize separately by calling src/compression_benchmarks.py with the flag --test-config.
Now outputs two separate files to plot_data: chunksize_benchmarks.csv and shuffle_benchmarks.csv.