search

sgkit-dev / vcf-zarr-publication

Manuscript and associated scripts for vcf-zarr publication
2 stars 7 forks source link

Plot 2 bit plink-esque line on Fig 2? #118

Closed jeromekelleher closed 3 months ago

jeromekelleher commented 3 months ago

@eric-czech raised a point that we don't directly compare the size of plink files. We could add this to fig 2 easily enough. It would be simple to plot a line for the size of the genotype matrix based on a two-bit encoding, which should basically be the same as plink. We could explicitly do the plink files as well, but it would be somewhat tedious.

Thoughts?

jeromekelleher commented 3 months ago

Decided to add it. For reference, the fig looks something like this now

tmp