sgkit-dev vcf-zarr-spec issues

sgkit-dev / vcf-zarr-spec

VCF Zarr Specification

Apache License 2.0

11 stars 2 forks source link

issues

Newest

Newest Most commented Recently updated Oldest Least commented Least recently updated

Releasing new versions of the spec

#32 tomwhite opened 6 days ago
1
Clarify call_genotype_phased for ploidy=1

#31 hyanwong opened 4 weeks ago
3
Add contig metadata

#30 jeromekelleher opened 1 month ago
0
Add non-redundant header entries as a list of name-value tuples

#29 jeromekelleher opened 1 month ago
0
Add ``filter_description`` field

#28 jeromekelleher opened 1 month ago
0
Update README.md

#27 hyanwong closed 2 months ago
0
Add link to https://sgkit-dev.github.io/bio2zarr/vcf2zarr/overview.html

#26 hyanwong closed 2 months ago
2
VCF spec 4.4 introduces the 'P' number for ploidy

#25 timothymillar opened 3 months ago
2
VCF-Zarr spec does not support partial phasing following the VCF 4.4 spec

#24 timothymillar opened 3 months ago
3
Index supporting overlap queries

#23 jeromekelleher opened 4 months ago
0
Recommendations about chunk sizes

#22 jeromekelleher opened 4 months ago
3
Dedicated array for chrom/pos lookup?

#21 jeromekelleher opened 4 months ago
3
Clarify mixed ploidy status in spec

#20 jeromekelleher opened 4 months ago
0
Filter description not provided

#19 jeromekelleher opened 5 months ago
0
Reserve the parents dimention

#18 timothymillar opened 5 months ago
1
Clarify type of ``vcf_zarr_version`` attr

#16 jeromekelleher opened 7 months ago
2
Clarify purpose of the ``vcf_header`` attribute and/or refine?

#15 jeromekelleher opened 7 months ago
3
Change Character dtype to U1?

#14 jeromekelleher opened 7 months ago
3
Provide validator script

#13 jeromekelleher opened 7 months ago
0
Clarify status of negative integers in spec

#12 jeromekelleher opened 7 months ago
5
Clarify missing data status of INFO and FORMAT fields

#11 jeromekelleher opened 7 months ago
0
GATK missing calls convention

#10 hammer closed 3 months ago
2
Update vcf_zarr_spec.md

#9 hyanwong closed 8 months ago
1
Correct 64-bit missing NaN value to be a signalling NaN value.

#8 tomwhite closed 1 year ago
0
Missing and fill NaN values are inconsistently quiet and signaling between 32-bit and 64-bit

#7 jbms closed 1 year ago
1
Add optional top-level attribute for source

#6 tomwhite opened 1 year ago
0
Store contig names in a `contig_id` array

#5 tomwhite closed 1 year ago
2
Top-level attribute(s) for assembly information

#4 jeromekelleher opened 1 year ago
0
Add optional top-level attribute for contig lengths

#3 tomwhite opened 1 year ago
0
Add top-level attribute to denote default phased/unphased status

#2 jeromekelleher opened 2 years ago
2
First version of spec

#1 tomwhite closed 2 years ago
1