Add support for reading samples from a file (-S)

sgkit-dev / vcztools

Partial reimplementation of bcftools for VCF Zarr

Apache License 2.0

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Closed jeromekelleher closed 2 months ago

jeromekelleher commented 2 months ago

This is needed when there are lots of samples, because command lines get too long for the shell.

Note that we should be careful to match the semantics of bcftools here when the file is empty (see also #61)

Will-Tyler commented 2 months ago

I created a separate issue (#78) for the empty file semantics. The other part is implemented in #76. Should be good to close this issue.