Closed catubc closed 2 years ago
catubc
commented
2 years ago Update: I installed GStreamer from here: https://gstreamer.freedesktop.org/documentation/installing/on-linux.html?gi-language=c
But am still getting a crash on install. Any advice? Thanks so much
catubc
commented
2 years ago Update: FYI: I restarted the install in a fresh environment, using python 3.6 and after clearing the pip cache.
Here's the end of the output (the entire thing was too long):
[783/869] Linking build/waf/3.6/gtk3/_glcanvas.cpython-36m-x86_64-linux-gnu.so
[784/869] Compiling sip/cpp/sip_propgridwxPropertyGridPage.cpp
[785/869] Compiling sip/cpp/sip_propgridwxPGVariant.cpp
[786/869] Linking build/waf/3.6/gtk3/_html2.cpython-36m-x86_64-linux-gnu.so
[787/869] Compiling sip/cpp/sip_propgridwxPGVIterator.cpp
/usr/bin/ld: cannot find -lwx_gtk3u_webview-3.0
collect2: error: ld returned 1 exit status
../../../../sip/cpp/sip_propgridwxPGProperty.cpp: In function ‘PyObject* meth_wxPGProperty_AddChild(PyObject*, PyObject*, PyObject*)’:
../../../../sip/cpp/sip_propgridwxPGProperty.cpp:1402:34: warning: ‘void wxPGProperty::AddChild(wxPGProperty*)’ is deprecated [-Wdeprecated-declarations]
sipCpp->AddChild(prop);
^
In file included from ../../../../ext/wxWidgets/include/wx/wx.h:14:0,
from ../../../../wx/include/wxPython/wxpy_api.h:41,
from ../../../../sip/cpp/sipAPI_propgrid.h:3308,
from ../../../../sip/cpp/sip_propgridwxPGProperty.cpp:10:
../../../../ext/wxWidgets/include/wx/propgrid/property.h:2231:24: note: declared here
wxDEPRECATED( void AddChild( wxPGProperty* prop ) );
^
../../../../ext/wxWidgets/include/wx/defs.h:654:43: note: in definition of macro ‘wxDEPRECATED’
#define wxDEPRECATED(x) wxDEPRECATED_DECL x
^
../../../../sip/cpp/sip_propgridwxPGProperty.cpp: In function ‘PyObject* meth_wxPGProperty_GetValueString(PyObject*, PyObject*, PyObject*)’:
../../../../sip/cpp/sip_propgridwxPGProperty.cpp:3142:69: warning: ‘wxString wxPGProperty::GetValueString(int) const’ is deprecated [-Wdeprecated-declarations]
sipRes = new ::wxString(sipCpp->GetValueString(argFlags));
^
In file included from ../../../../ext/wxWidgets/include/wx/wx.h:14:0,
from ../../../../wx/include/wxPython/wxpy_api.h:41,
from ../../../../sip/cpp/sipAPI_propgrid.h:3308,
from ../../../../sip/cpp/sip_propgridwxPGProperty.cpp:10:
../../../../ext/wxWidgets/include/wx/propgrid/property.h:1657:28: note: declared here
wxDEPRECATED( wxString GetValueString( int argFlags = 0 ) const );
^
../../../../ext/wxWidgets/include/wx/defs.h:654:43: note: in definition of macro ‘wxDEPRECATED’
#define wxDEPRECATED(x) wxDEPRECATED_DECL x
^
Waf: Leaving directory `/tmp/pip-install-snv642tw/wxpython_faaddcf196704ced8743d8ca6906bf35/build/waf/3.6/gtk3'
Build failed
-> task in '_html2' failed with exit status 1 (run with -v to display more information)
Command '"/media/cat/4TBSSD/anaconda3/envs/simba2/bin/python3.6" /tmp/pip-install-snv642tw/wxpython_faaddcf196704ced8743d8ca6906bf35/bin/waf-2.0.8 --wx_config=/tmp/pip-install-snv642tw/wxpython_faaddcf196704ced8743d8ca6906bf35/build/wxbld/gtk3/wx-config --gtk3 --python="/media/cat/4TBSSD/anaconda3/envs/simba2/bin/python3.6" --out=build/waf/3.6/gtk3 configure build ' failed with exit code 1.
Finished command: build_py (4m47.316s)
Finished command: build (5m55.162s)
Command '"/media/cat/4TBSSD/anaconda3/envs/simba2/bin/python3.6" -u build.py build' failed with exit code 1.
----------------------------------------
ERROR: Failed building wheel for wxpython
Running setup.py clean for wxpython
Building wheel for dash-renderer (setup.py) ... done
Created wheel for dash-renderer: filename=dash_renderer-1.6.0-py3-none-any.whl size=1182219 sha256=4e2731d37cc072433bc6db662d7963b1366ac97f04c9aff330f5881df1f5cb5c
Stored in directory: /home/cat/.cache/pip/wheels/62/cf/b4/26a5faad18c3b91b3228c4e187479671d09a4e35bc8aabbd44
Building wheel for dash-table (setup.py) ... done
Created wheel for dash-table: filename=dash_table-4.9.0-py3-none-any.whl size=1780776 sha256=aa4b1a5aaebcde627b32e9a2a7724996a91a07e1e95e92d6fb747ef08d327758
Stored in directory: /home/cat/.cache/pip/wheels/1e/49/02/9d6100a6639526779f71579772b875088dab6d194cfb1fa084
Building wheel for retrying (setup.py) ... done
Created wheel for retrying: filename=retrying-1.3.3-py3-none-any.whl size=11448 sha256=07f8377ece9440971ad2233cd329c18f0c9adb99bab2261b3c21f8c47cdcf4d5
Stored in directory: /home/cat/.cache/pip/wheels/ac/cb/8a/b27bf6323e2f4c462dcbf77d70b7c5e7868a7fbe12871770cf
Building wheel for future (setup.py) ... done
Created wheel for future: filename=future-0.18.2-py3-none-any.whl size=491070 sha256=9d0795f967bf8e936987670aaf06d09876b6e17f12e0def712e92525776c3029
Stored in directory: /home/cat/.cache/pip/wheels/6e/9c/ed/4499c9865ac1002697793e0ae05ba6be33553d098f3347fb94
Successfully built dash dash-color-picker dash-colorscales dash-core-components dash-html-components dtreeviz imutils pyyaml shap tabulate dash-renderer dash-table retrying future
Failed to build wxpython
Installing collected packages: zipp, typing-extensions, six, pyyaml, numpy, MarkupSafe, importlib-metadata, dataclasses, Werkzeug, toolz, scipy, python-dateutil, pyparsing, kiwisolver, joblib, jinja2, itsdangerous, decorator, dask, cycler, click, scikit-learn, retrying, PyWavelets, pytz, Pillow, networkx, matplotlib, Flask, cloudpickle, brotli, tqdm, tabulate, shapely, scikit-image, plotly, patsy, pandas, opencv-python, numexpr, llvmlite, imbalanced-learn, imageio, graphviz, future, flask-compress, dash-table, dash-renderer, dash-html-components, dash-core-components, colour, attrs, yellowbrick, xgboost, wxpython, tables, statsmodels, shap, seaborn, pyarrow, numba, imutils, imgaug, imblearn, h5py, eli5, dtreeviz, dash-colorscales, dash-color-picker, dash, cefpython3, simba-uw-tf-dev
Running setup.py install for wxpython ... error
ERROR: Command errored out with exit status 1:
command: /media/cat/4TBSSD/anaconda3/envs/simba2/bin/python3.6 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-snv642tw/wxpython_faaddcf196704ced8743d8ca6906bf35/setup.py'"'"'; __file__='"'"'/tmp/pip-install-snv642tw/wxpython_faaddcf196704ced8743d8ca6906bf35/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' install --record /tmp/pip-record-wg5mz2ez/install-record.txt --single-version-externally-managed --compile --install-headers /media/cat/4TBSSD/anaconda3/envs/simba2/include/python3.6m/wxpython
cwd: /tmp/pip-install-snv642tw/wxpython_faaddcf196704ced8743d8ca6906bf35/
Complete output (200 lines):
/media/cat/4TBSSD/anaconda3/envs/simba2/lib/python3.6/site-packages/setuptools/dist.py:720: UserWarning: Usage of dash-separated 'license-file' will not be supported in future versions. Please use the underscore name 'license_file' instead
% (opt, underscore_opt)
/media/cat/4TBSSD/anaconda3/envs/simba2/lib/python3.6/site-packages/setuptools/dist.py:294: DistDeprecationWarning: use_2to3 is ignored.
warnings.warn(f"{attr} is ignored.", DistDeprecationWarning)
running install
running build
WARNING: Building this way assumes that all generated files have been
generated already. If that is not the case then use build.py directly
to generate the source and perform the build stage. You can use
--skip-build with the bdist_* or install commands to avoid this
message and the wxWidgets and Phoenix build steps in the future.
"/media/cat/4TBSSD/anaconda3/envs/simba2/bin/python3.6" -u build.py build
Will build using: "/media/cat/4TBSSD/anaconda3/envs/simba2/bin/python3.6"
3.6.0 | packaged by conda-forge | (default, Feb 9 2017, 14:36:55)
[GCC 4.8.2 20140120 (Red Hat 4.8.2-15)]
Python's architecture is 64bit
cfg.VERSION: 4.0.4
Running command: build
Running command: build_wx
wxWidgets build options: ['--wxpython', '--unicode', '--no_config', '--gtk3']
Configure options: ['--enable-unicode', '--with-gtk=3', '--with-opengl', '--enable-sound', '--enable-graphics_ctx', '--enable-mediactrl', '--enable-display', '--enable-geometry', '--enable-debug_flag', '--enable-optimise', '--disable-debugreport', '--enable-uiactionsim', '--enable-autoidman', '--with-sdl']
/usr/bin/make
make --jobs=32
(if test -f utils/wxrc/Makefile ; then cd utils/wxrc && make all ; fi)
make[1]: Entering directory '/tmp/pip-install-snv642tw/wxpython_faaddcf196704ced8743d8ca6906bf35/build/wxbld/gtk3/utils/wxrc'
make[1]: Nothing to be done for 'all'.
make[1]: Leaving directory '/tmp/pip-install-snv642tw/wxpython_faaddcf196704ced8743d8ca6906bf35/build/wxbld/gtk3/utils/wxrc'
Building message catalogs in /tmp/pip-install-snv642tw/wxpython_faaddcf196704ced8743d8ca6906bf35/ext/wxWidgets/locale
make allmo
make[1]: Entering directory '/tmp/pip-install-snv642tw/wxpython_faaddcf196704ced8743d8ca6906bf35/ext/wxWidgets/locale'
make[1]: 'af.mo' is up to date.
make[1]: Leaving directory '/tmp/pip-install-snv642tw/wxpython_faaddcf196704ced8743d8ca6906bf35/ext/wxWidgets/locale'
make[1]: Entering directory '/tmp/pip-install-snv642tw/wxpython_faaddcf196704ced8743d8ca6906bf35/ext/wxWidgets/locale'
make[1]: 'an.mo' is up to date.
make[1]: Leaving directory '/tmp/pip-install-snv642tw/wxpython_faaddcf196704ced8743d8ca6906bf35/ext/wxWidgets/locale'
make[1]: Entering directory '/tmp/pip-install-snv642tw/wxpython_faaddcf196704ced8743d8ca6906bf35/ext/wxWidgets/locale'
make[1]: 'ar.mo' is up to date.
make[1]: Leaving directory '/tmp/pip-install-snv642tw/wxpython_faaddcf196704ced8743d8ca6906bf35/ext/wxWidgets/locale'
make[1]: Entering directory '/tmp/pip-install-snv642tw/wxpython_faaddcf196704ced8743d8ca6906bf35/ext/wxWidgets/locale'
make[1]: 'ca.mo' is up to date.
make[1]: Leaving directory '/tmp/pip-install-snv642tw/wxpython_faaddcf196704ced8743d8ca6906bf35/ext/wxWidgets/locale'
make[1]: Entering directory '/tmp/pip-install-snv642tw/wxpython_faaddcf196704ced8743d8ca6906bf35/ext/wxWidgets/locale'
make[1]: 'ca@valencia.mo' is up to date.
make[1]: Leaving directory '/tmp/pip-install-snv642tw/wxpython_faaddcf196704ced8743d8ca6906bf35/ext/wxWidgets/locale'
make[1]: Entering directory '/tmp/pip-install-snv642tw/wxpython_faaddcf196704ced8743d8ca6906bf35/ext/wxWidgets/locale'
make[1]: 'cs.mo' is up to date.
make[1]: Leaving directory '/tmp/pip-install-snv642tw/wxpython_faaddcf196704ced8743d8ca6906bf35/ext/wxWidgets/locale'
make[1]: Entering directory '/tmp/pip-install-snv642tw/wxpython_faaddcf196704ced8743d8ca6906bf35/ext/wxWidgets/locale'
make[1]: 'da.mo' is up to date.
make[1]: Leaving directory '/tmp/pip-install-snv642tw/wxpython_faaddcf196704ced8743d8ca6906bf35/ext/wxWidgets/locale'
make[1]: Entering directory '/tmp/pip-install-snv642tw/wxpython_faaddcf196704ced8743d8ca6906bf35/ext/wxWidgets/locale'
make[1]: 'de.mo' is up to date.
make[1]: Leaving directory '/tmp/pip-install-snv642tw/wxpython_faaddcf196704ced8743d8ca6906bf35/ext/wxWidgets/locale'
make[1]: Entering directory '/tmp/pip-install-snv642tw/wxpython_faaddcf196704ced8743d8ca6906bf35/ext/wxWidgets/locale'
make[1]: 'el.mo' is up to date.
make[1]: Leaving directory '/tmp/pip-install-snv642tw/wxpython_faaddcf196704ced8743d8ca6906bf35/ext/wxWidgets/locale'
make[1]: Entering directory '/tmp/pip-install-snv642tw/wxpython_faaddcf196704ced8743d8ca6906bf35/ext/wxWidgets/locale'
make[1]: 'es.mo' is up to date.
make[1]: Leaving directory '/tmp/pip-install-snv642tw/wxpython_faaddcf196704ced8743d8ca6906bf35/ext/wxWidgets/locale'
make[1]: Entering directory '/tmp/pip-install-snv642tw/wxpython_faaddcf196704ced8743d8ca6906bf35/ext/wxWidgets/locale'
make[1]: 'eu.mo' is up to date.
make[1]: Leaving directory '/tmp/pip-install-snv642tw/wxpython_faaddcf196704ced8743d8ca6906bf35/ext/wxWidgets/locale'
make[1]: Entering directory '/tmp/pip-install-snv642tw/wxpython_faaddcf196704ced8743d8ca6906bf35/ext/wxWidgets/locale'
make[1]: 'fi.mo' is up to date.
make[1]: Leaving directory '/tmp/pip-install-snv642tw/wxpython_faaddcf196704ced8743d8ca6906bf35/ext/wxWidgets/locale'
make[1]: Entering directory '/tmp/pip-install-snv642tw/wxpython_faaddcf196704ced8743d8ca6906bf35/ext/wxWidgets/locale'
make[1]: 'fr.mo' is up to date.
make[1]: Leaving directory '/tmp/pip-install-snv642tw/wxpython_faaddcf196704ced8743d8ca6906bf35/ext/wxWidgets/locale'
make[1]: Entering directory '/tmp/pip-install-snv642tw/wxpython_faaddcf196704ced8743d8ca6906bf35/ext/wxWidgets/locale'
make[1]: 'gl_ES.mo' is up to date.
make[1]: Leaving directory '/tmp/pip-install-snv642tw/wxpython_faaddcf196704ced8743d8ca6906bf35/ext/wxWidgets/locale'
make[1]: Entering directory '/tmp/pip-install-snv642tw/wxpython_faaddcf196704ced8743d8ca6906bf35/ext/wxWidgets/locale'
make[1]: 'hi.mo' is up to date.
make[1]: Leaving directory '/tmp/pip-install-snv642tw/wxpython_faaddcf196704ced8743d8ca6906bf35/ext/wxWidgets/locale'
make[1]: Entering directory '/tmp/pip-install-snv642tw/wxpython_faaddcf196704ced8743d8ca6906bf35/ext/wxWidgets/locale'
make[1]: 'hu.mo' is up to date.
make[1]: Leaving directory '/tmp/pip-install-snv642tw/wxpython_faaddcf196704ced8743d8ca6906bf35/ext/wxWidgets/locale'
make[1]: Entering directory '/tmp/pip-install-snv642tw/wxpython_faaddcf196704ced8743d8ca6906bf35/ext/wxWidgets/locale'
make[1]: 'id.mo' is up to date.
make[1]: Leaving directory '/tmp/pip-install-snv642tw/wxpython_faaddcf196704ced8743d8ca6906bf35/ext/wxWidgets/locale'
make[1]: Entering directory '/tmp/pip-install-snv642tw/wxpython_faaddcf196704ced8743d8ca6906bf35/ext/wxWidgets/locale'
make[1]: 'it.mo' is up to date.
make[1]: Leaving directory '/tmp/pip-install-snv642tw/wxpython_faaddcf196704ced8743d8ca6906bf35/ext/wxWidgets/locale'
make[1]: Entering directory '/tmp/pip-install-snv642tw/wxpython_faaddcf196704ced8743d8ca6906bf35/ext/wxWidgets/locale'
make[1]: 'ja.mo' is up to date.
make[1]: Leaving directory '/tmp/pip-install-snv642tw/wxpython_faaddcf196704ced8743d8ca6906bf35/ext/wxWidgets/locale'
make[1]: Entering directory '/tmp/pip-install-snv642tw/wxpython_faaddcf196704ced8743d8ca6906bf35/ext/wxWidgets/locale'
make[1]: 'ko_KR.mo' is up to date.
make[1]: Leaving directory '/tmp/pip-install-snv642tw/wxpython_faaddcf196704ced8743d8ca6906bf35/ext/wxWidgets/locale'
make[1]: Entering directory '/tmp/pip-install-snv642tw/wxpython_faaddcf196704ced8743d8ca6906bf35/ext/wxWidgets/locale'
make[1]: 'lt.mo' is up to date.
make[1]: Leaving directory '/tmp/pip-install-snv642tw/wxpython_faaddcf196704ced8743d8ca6906bf35/ext/wxWidgets/locale'
make[1]: Entering directory '/tmp/pip-install-snv642tw/wxpython_faaddcf196704ced8743d8ca6906bf35/ext/wxWidgets/locale'
make[1]: 'lv.mo' is up to date.
make[1]: Leaving directory '/tmp/pip-install-snv642tw/wxpython_faaddcf196704ced8743d8ca6906bf35/ext/wxWidgets/locale'
make[1]: Entering directory '/tmp/pip-install-snv642tw/wxpython_faaddcf196704ced8743d8ca6906bf35/ext/wxWidgets/locale'
make[1]: 'ms.mo' is up to date.
make[1]: Leaving directory '/tmp/pip-install-snv642tw/wxpython_faaddcf196704ced8743d8ca6906bf35/ext/wxWidgets/locale'
make[1]: Entering directory '/tmp/pip-install-snv642tw/wxpython_faaddcf196704ced8743d8ca6906bf35/ext/wxWidgets/locale'
make[1]: 'msw/it.mo' is up to date.
make[1]: Leaving directory '/tmp/pip-install-snv642tw/wxpython_faaddcf196704ced8743d8ca6906bf35/ext/wxWidgets/locale'
make[1]: Entering directory '/tmp/pip-install-snv642tw/wxpython_faaddcf196704ced8743d8ca6906bf35/ext/wxWidgets/locale'
make[1]: 'nb.mo' is up to date.
make[1]: Leaving directory '/tmp/pip-install-snv642tw/wxpython_faaddcf196704ced8743d8ca6906bf35/ext/wxWidgets/locale'
make[1]: Entering directory '/tmp/pip-install-snv642tw/wxpython_faaddcf196704ced8743d8ca6906bf35/ext/wxWidgets/locale'
make[1]: 'ne.mo' is up to date.
make[1]: Leaving directory '/tmp/pip-install-snv642tw/wxpython_faaddcf196704ced8743d8ca6906bf35/ext/wxWidgets/locale'
make[1]: Entering directory '/tmp/pip-install-snv642tw/wxpython_faaddcf196704ced8743d8ca6906bf35/ext/wxWidgets/locale'
make[1]: 'nl.mo' is up to date.
make[1]: Leaving directory '/tmp/pip-install-snv642tw/wxpython_faaddcf196704ced8743d8ca6906bf35/ext/wxWidgets/locale'
make[1]: Entering directory '/tmp/pip-install-snv642tw/wxpython_faaddcf196704ced8743d8ca6906bf35/ext/wxWidgets/locale'
make[1]: 'pl.mo' is up to date.
make[1]: Leaving directory '/tmp/pip-install-snv642tw/wxpython_faaddcf196704ced8743d8ca6906bf35/ext/wxWidgets/locale'
make[1]: Entering directory '/tmp/pip-install-snv642tw/wxpython_faaddcf196704ced8743d8ca6906bf35/ext/wxWidgets/locale'
make[1]: 'pt_BR.mo' is up to date.
make[1]: Leaving directory '/tmp/pip-install-snv642tw/wxpython_faaddcf196704ced8743d8ca6906bf35/ext/wxWidgets/locale'
make[1]: Entering directory '/tmp/pip-install-snv642tw/wxpython_faaddcf196704ced8743d8ca6906bf35/ext/wxWidgets/locale'
make[1]: 'pt.mo' is up to date.
make[1]: Leaving directory '/tmp/pip-install-snv642tw/wxpython_faaddcf196704ced8743d8ca6906bf35/ext/wxWidgets/locale'
make[1]: Entering directory '/tmp/pip-install-snv642tw/wxpython_faaddcf196704ced8743d8ca6906bf35/ext/wxWidgets/locale'
make[1]: 'ro.mo' is up to date.
make[1]: Leaving directory '/tmp/pip-install-snv642tw/wxpython_faaddcf196704ced8743d8ca6906bf35/ext/wxWidgets/locale'
make[1]: Entering directory '/tmp/pip-install-snv642tw/wxpython_faaddcf196704ced8743d8ca6906bf35/ext/wxWidgets/locale'
make[1]: 'ru.mo' is up to date.
make[1]: Leaving directory '/tmp/pip-install-snv642tw/wxpython_faaddcf196704ced8743d8ca6906bf35/ext/wxWidgets/locale'
make[1]: Entering directory '/tmp/pip-install-snv642tw/wxpython_faaddcf196704ced8743d8ca6906bf35/ext/wxWidgets/locale'
make[1]: 'sk.mo' is up to date.
make[1]: Leaving directory '/tmp/pip-install-snv642tw/wxpython_faaddcf196704ced8743d8ca6906bf35/ext/wxWidgets/locale'
make[1]: Entering directory '/tmp/pip-install-snv642tw/wxpython_faaddcf196704ced8743d8ca6906bf35/ext/wxWidgets/locale'
make[1]: 'sl.mo' is up to date.
make[1]: Leaving directory '/tmp/pip-install-snv642tw/wxpython_faaddcf196704ced8743d8ca6906bf35/ext/wxWidgets/locale'
make[1]: Entering directory '/tmp/pip-install-snv642tw/wxpython_faaddcf196704ced8743d8ca6906bf35/ext/wxWidgets/locale'
make[1]: 'sq.mo' is up to date.
make[1]: Leaving directory '/tmp/pip-install-snv642tw/wxpython_faaddcf196704ced8743d8ca6906bf35/ext/wxWidgets/locale'
make[1]: Entering directory '/tmp/pip-install-snv642tw/wxpython_faaddcf196704ced8743d8ca6906bf35/ext/wxWidgets/locale'
make[1]: 'sv.mo' is up to date.
make[1]: Leaving directory '/tmp/pip-install-snv642tw/wxpython_faaddcf196704ced8743d8ca6906bf35/ext/wxWidgets/locale'
make[1]: Entering directory '/tmp/pip-install-snv642tw/wxpython_faaddcf196704ced8743d8ca6906bf35/ext/wxWidgets/locale'
make[1]: 'ta.mo' is up to date.
make[1]: Leaving directory '/tmp/pip-install-snv642tw/wxpython_faaddcf196704ced8743d8ca6906bf35/ext/wxWidgets/locale'
make[1]: Entering directory '/tmp/pip-install-snv642tw/wxpython_faaddcf196704ced8743d8ca6906bf35/ext/wxWidgets/locale'
make[1]: 'tr.mo' is up to date.
make[1]: Leaving directory '/tmp/pip-install-snv642tw/wxpython_faaddcf196704ced8743d8ca6906bf35/ext/wxWidgets/locale'
make[1]: Entering directory '/tmp/pip-install-snv642tw/wxpython_faaddcf196704ced8743d8ca6906bf35/ext/wxWidgets/locale'
make[1]: 'uk.mo' is up to date.
make[1]: Leaving directory '/tmp/pip-install-snv642tw/wxpython_faaddcf196704ced8743d8ca6906bf35/ext/wxWidgets/locale'
make[1]: Entering directory '/tmp/pip-install-snv642tw/wxpython_faaddcf196704ced8743d8ca6906bf35/ext/wxWidgets/locale'
make[1]: 'vi.mo' is up to date.
make[1]: Leaving directory '/tmp/pip-install-snv642tw/wxpython_faaddcf196704ced8743d8ca6906bf35/ext/wxWidgets/locale'
make[1]: Entering directory '/tmp/pip-install-snv642tw/wxpython_faaddcf196704ced8743d8ca6906bf35/ext/wxWidgets/locale'
make[1]: 'zh_CN.mo' is up to date.
make[1]: Leaving directory '/tmp/pip-install-snv642tw/wxpython_faaddcf196704ced8743d8ca6906bf35/ext/wxWidgets/locale'
make[1]: Entering directory '/tmp/pip-install-snv642tw/wxpython_faaddcf196704ced8743d8ca6906bf35/ext/wxWidgets/locale'
make[1]: 'zh_TW.mo' is up to date.
make[1]: Leaving directory '/tmp/pip-install-snv642tw/wxpython_faaddcf196704ced8743d8ca6906bf35/ext/wxWidgets/locale'
Finished command: build_wx (0m1.42s)
Running command: build_py
Checking for /tmp/pip-install-snv642tw/wxpython_faaddcf196704ced8743d8ca6906bf35/bin/waf-2.0.8...
"/media/cat/4TBSSD/anaconda3/envs/simba2/bin/python3.6" /tmp/pip-install-snv642tw/wxpython_faaddcf196704ced8743d8ca6906bf35/bin/waf-2.0.8 --wx_config=/tmp/pip-install-snv642tw/wxpython_faaddcf196704ced8743d8ca6906bf35/build/wxbld/gtk3/wx-config --gtk3 --python="/media/cat/4TBSSD/anaconda3/envs/simba2/bin/python3.6" --out=build/waf/3.6/gtk3 configure build
Setting top to : /tmp/pip-install-snv642tw/wxpython_faaddcf196704ced8743d8ca6906bf35
Setting out to : /tmp/pip-install-snv642tw/wxpython_faaddcf196704ced8743d8ca6906bf35/build/waf/3.6/gtk3
Checking for 'gcc' (C compiler) : /usr/bin/gcc
Checking for 'g++' (C++ compiler) : /usr/bin/g++
Checking for program 'python' : /media/cat/4TBSSD/anaconda3/envs/simba2/bin/python3.6
Checking for python version >= 2.7.0 : 3.6.0
python-config : /media/cat/4TBSSD/anaconda3/envs/simba2/bin/python3.6-config
Asking python-config for pyembed '--cflags --libs --ldflags' flags : yes
Testing pyembed configuration : yes
Asking python-config for pyext '--cflags --libs --ldflags' flags : yes
Testing pyext configuration : yes
Finding libs for WX : yes
Finding libs for WXADV : yes
Finding libs for WXSTC : yes
Finding libs for WXHTML : yes
Finding libs for WXGL : yes
Finding libs for WXWEBVIEW : yes
Finding libs for WXXML : yes
Finding libs for WXXRC : yes
Finding libs for WXRICHTEXT : yes
Finding libs for WXMEDIA : yes
Finding libs for WXRIBBON : yes
Finding libs for WXPROPGRID : yes
Finding libs for WXAUI : yes
'configure' finished successfully (1.698s)
Waf: Entering directory `/tmp/pip-install-snv642tw/wxpython_faaddcf196704ced8743d8ca6906bf35/build/waf/3.6/gtk3'
[639/869] Linking build/waf/3.6/gtk3/_html2.cpython-36m-x86_64-linux-gnu.so
[644/869] Linking build/waf/3.6/gtk3/_xml.cpython-36m-x86_64-linux-gnu.so
[650/869] Linking build/waf/3.6/gtk3/_xrc.cpython-36m-x86_64-linux-gnu.so
/usr/bin/ld: cannot find -lwx_gtk3u_webview-3.0
collect2: error: ld returned 1 exit status
Waf: Leaving directory `/tmp/pip-install-snv642tw/wxpython_faaddcf196704ced8743d8ca6906bf35/build/waf/3.6/gtk3'
Build failed
-> task in '_html2' failed with exit status 1 (run with -v to display more information)
Command '"/media/cat/4TBSSD/anaconda3/envs/simba2/bin/python3.6" /tmp/pip-install-snv642tw/wxpython_faaddcf196704ced8743d8ca6906bf35/bin/waf-2.0.8 --wx_config=/tmp/pip-install-snv642tw/wxpython_faaddcf196704ced8743d8ca6906bf35/build/wxbld/gtk3/wx-config --gtk3 --python="/media/cat/4TBSSD/anaconda3/envs/simba2/bin/python3.6" --out=build/waf/3.6/gtk3 configure build ' failed with exit code 1.
Finished command: build_py (0m4.377s)
Finished command: build (0m5.420s)
Command '"/media/cat/4TBSSD/anaconda3/envs/simba2/bin/python3.6" -u build.py build' failed with exit code 1.
----------------------------------------
ERROR: Command errored out with exit status 1: /media/cat/4TBSSD/anaconda3/envs/simba2/bin/python3.6 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-snv642tw/wxpython_faaddcf196704ced8743d8ca6906bf35/setup.py'"'"'; __file__='"'"'/tmp/pip-install-snv642tw/wxpython_faaddcf196704ced8743d8ca6906bf35/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' install --record /tmp/pip-record-wg5mz2ez/install-record.txt --single-version-externally-managed --compile --install-headers /media/cat/4TBSSD/anaconda3/envs/simba2/include/python3.6m/wxpython Check the logs for full command output.
(simba2) cat@cat-Precision-T3610:~$ 
sronilsson
commented
2 years ago Hi @catubc - I'm surprised to see wxpython there, I don't think anything in SimBA depends on it. What about pip install simba-uw-tf-dev --no-deps ?
catubc
commented
2 years ago Thanks, Well, calling simba from the command line then doesn't work
(simba3) cat@cat-Precision-T3610:~/code/simba$ pip cache purge
Files removed: 174
(simba3) cat@cat-Precision-T3610:~/code/simba$ pip install simba-uw-tf-dev --no-deps --no-cache-dir
Collecting simba-uw-tf-dev
Downloading Simba_UW_tf_dev-0.88.8-py3-none-any.whl (10.5 MB)
|████████████████████████████████| 10.5 MB 4.9 MB/s
Installing collected packages: simba-uw-tf-dev
Successfully installed simba-uw-tf-dev-0.88.8
(simba3) cat@cat-Precision-T3610:~/code/simba$ simba
Traceback (most recent call last):
File "/media/cat/4TBSSD/anaconda3/envs/simba3/bin/simba", line 5, in <module>
from simba.SimBA import main
File "/media/cat/4TBSSD/anaconda3/envs/simba3/lib/python3.6/site-packages/simba/SimBA.py", line 6, in <module>
import seaborn as sns
ModuleNotFoundError: No module named 'seaborn'
(simba3) cat@cat-Precision-T3610:~/code/simba$ pip install seaborn
Collecting seaborn
Downloading seaborn-0.11.2-py3-none-any.whl (292 kB)
|████████████████████████████████| 292 kB 5.4 MB/s
Collecting scipy>=1.0
Downloading scipy-1.5.4-cp36-cp36m-manylinux1_x86_64.whl (25.9 MB)
|████████████████████████████████| 25.9 MB 35 kB/s
Collecting numpy>=1.15
Downloading numpy-1.19.5-cp36-cp36m-manylinux2010_x86_64.whl (14.8 MB)
|████████████████████████████████| 14.8 MB 37.4 MB/s
Collecting pandas>=0.23
Downloading pandas-0.25.3-cp36-cp36m-manylinux1_x86_64.whl (10.4 MB)
|████████████████████████████████| 10.4 MB 42.3 MB/s
Collecting matplotlib>=2.2
Downloading matplotlib-3.3.4-cp36-cp36m-manylinux1_x86_64.whl (11.5 MB)
|████████████████████████████████| 11.5 MB 52.3 MB/s
Collecting cycler>=0.10
Downloading cycler-0.11.0-py3-none-any.whl (6.4 kB)
Collecting kiwisolver>=1.0.1
Downloading kiwisolver-1.3.1-cp36-cp36m-manylinux1_x86_64.whl (1.1 MB)
|████████████████████████████████| 1.1 MB 31.4 MB/s
Collecting pyparsing!=2.0.4,!=2.1.2,!=2.1.6,>=2.0.3
Downloading pyparsing-3.0.6-py3-none-any.whl (97 kB)
|████████████████████████████████| 97 kB 2.8 MB/s
Collecting pillow>=6.2.0
Downloading Pillow-8.4.0-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (3.1 MB)
|████████████████████████████████| 3.1 MB 26.2 MB/s
Collecting python-dateutil>=2.1
Downloading python_dateutil-2.8.2-py2.py3-none-any.whl (247 kB)
|████████████████████████████████| 247 kB 38.6 MB/s
Collecting pytz>=2017.2
Downloading pytz-2021.3-py2.py3-none-any.whl (503 kB)
|████████████████████████████████| 503 kB 33.2 MB/s
Collecting six>=1.5
Downloading six-1.16.0-py2.py3-none-any.whl (11 kB)
Installing collected packages: six, pytz, python-dateutil, pyparsing, pillow, numpy, kiwisolver, cycler, scipy, pandas, matplotlib, seaborn
ERROR: pip's dependency resolver does not currently take into account all the packages that are installed. This behaviour is the source of the following dependency conflicts.
simba-uw-tf-dev 0.88.8 requires cefpython3==66.0, which is not installed.
simba-uw-tf-dev 0.88.8 requires dash==1.14.0, which is not installed.
simba-uw-tf-dev 0.88.8 requires dash-color-picker==0.0.1, which is not installed.
simba-uw-tf-dev 0.88.8 requires dash-colorscales==0.0.4, which is not installed.
simba-uw-tf-dev 0.88.8 requires dash-core-components==1.10.2, which is not installed.
simba-uw-tf-dev 0.88.8 requires dash-html-components==1.0.3, which is not installed.
simba-uw-tf-dev 0.88.8 requires dtreeviz==0.8.1, which is not installed.
simba-uw-tf-dev 0.88.8 requires eli5==0.10.1, which is not installed.
simba-uw-tf-dev 0.88.8 requires graphviz==0.11, which is not installed.
simba-uw-tf-dev 0.88.8 requires h5py==2.9.0, which is not installed.
simba-uw-tf-dev 0.88.8 requires imblearn==0.0, which is not installed.
simba-uw-tf-dev 0.88.8 requires imgaug==0.4.0, which is not installed.
simba-uw-tf-dev 0.88.8 requires imutils==0.5.2, which is not installed.
simba-uw-tf-dev 0.88.8 requires numba==0.48.0, which is not installed.
simba-uw-tf-dev 0.88.8 requires numexpr==2.6.9, which is not installed.
simba-uw-tf-dev 0.88.8 requires opencv-python==3.4.5.20, which is not installed.
simba-uw-tf-dev 0.88.8 requires plotly==4.9.0, which is not installed.
simba-uw-tf-dev 0.88.8 requires pyarrow==0.17.1, which is not installed.
simba-uw-tf-dev 0.88.8 requires pyyaml==5.3.1, which is not installed.
simba-uw-tf-dev 0.88.8 requires scikit-image==0.14.2, which is not installed.
simba-uw-tf-dev 0.88.8 requires scikit-learn==0.22.2, which is not installed.
simba-uw-tf-dev 0.88.8 requires shap==0.35.0, which is not installed.
simba-uw-tf-dev 0.88.8 requires shapely==1.7, which is not installed.
simba-uw-tf-dev 0.88.8 requires statsmodels==0.9.0, which is not installed.
simba-uw-tf-dev 0.88.8 requires tables==3.6.1, which is not installed.
simba-uw-tf-dev 0.88.8 requires tabulate==0.8.3, which is not installed.
simba-uw-tf-dev 0.88.8 requires tqdm==4.30.0, which is not installed.
simba-uw-tf-dev 0.88.8 requires wxpython==4.0.4, which is not installed.
simba-uw-tf-dev 0.88.8 requires xgboost==0.90, which is not installed.
simba-uw-tf-dev 0.88.8 requires yellowbrick==0.9.1, which is not installed.
simba-uw-tf-dev 0.88.8 requires matplotlib==3.0.3, but you have matplotlib 3.3.4 which is incompatible.
simba-uw-tf-dev 0.88.8 requires numpy==1.18.1, but you have numpy 1.19.5 which is incompatible.
simba-uw-tf-dev 0.88.8 requires Pillow==5.4.1, but you have pillow 8.4.0 which is incompatible.
simba-uw-tf-dev 0.88.8 requires scipy==1.1.0, but you have scipy 1.5.4 which is incompatible.
simba-uw-tf-dev 0.88.8 requires seaborn==0.9.0, but you have seaborn 0.11.2 which is incompatible.
Successfully installed cycler-0.11.0 kiwisolver-1.3.1 matplotlib-3.3.4 numpy-1.19.5 pandas-0.25.3 pillow-8.4.0 pyparsing-3.0.6 python-dateutil-2.8.2 pytz-2021.3 scipy-1.5.4 seaborn-0.11.2 six-1.16.0
(simba3) cat@cat-Precision-T3610:~/code/simba$
work:
(simba3) cat@cat-Precision-T3610:~/code/simba$ simba
Traceback (most recent call last):
File "/media/cat/4TBSSD/anaconda3/envs/simba3/bin/simba", line 5, in <module>
from simba.SimBA import main
File "/media/cat/4TBSSD/anaconda3/envs/simba3/lib/python3.6/site-packages/simba/SimBA.py", line 6, in <module>
import seaborn as sns
File "/media/cat/4TBSSD/anaconda3/envs/simba3/lib/python3.6/site-packages/seaborn/__init__.py", line 2, in <module>
from .rcmod import * # noqa: F401,F403
File "/media/cat/4TBSSD/anaconda3/envs/simba3/lib/python3.6/site-packages/seaborn/rcmod.py", line 5, in <module>
import matplotlib as mpl
File "/media/cat/4TBSSD/anaconda3/envs/simba3/lib/python3.6/site-packages/matplotlib/__init__.py", line 107, in <module>
from . import cbook, rcsetup
File "/media/cat/4TBSSD/anaconda3/envs/simba3/lib/python3.6/site-packages/matplotlib/rcsetup.py", line 28, in <module>
from matplotlib.fontconfig_pattern import parse_fontconfig_pattern
File "/media/cat/4TBSSD/anaconda3/envs/simba3/lib/python3.6/site-packages/matplotlib/fontconfig_pattern.py", line 15, in <module>
from pyparsing import (Literal, ZeroOrMore, Optional, Regex, StringEnd,
File "/media/cat/4TBSSD/anaconda3/envs/simba3/lib/python3.6/site-packages/pyparsing/__init__.py", line 130, in <module>
__version__ = __version_info__.__version__
AttributeError: 'version_info' object has no attribute '__version__'
(simba3) cat@cat-Precision-T3610:~/code/simba$
Interesting, seems to be seaborn / matplotlib version clash? Maybe they are installed with different pip versions? Can you make sure it is matplotlib 3.0.3 and seaborn 0.9.0 ? Or also try reinstall both matplotlib and seaborn at latest versions pip install matplotlib --upgrade and same for seaborn
catubc
commented
2 years ago (simba3) cat@cat-Precision-T3610:~$ pip install seaborn --upgrade
Requirement already satisfied: seaborn in /media/cat/4TBSSD/anaconda3/envs/simba3/lib/python3.6/site-packages (0.9.0)
Collecting seaborn
Using cached seaborn-0.11.2-py3-none-any.whl (292 kB)
Requirement already satisfied: matplotlib>=2.2 in /media/cat/4TBSSD/anaconda3/envs/simba3/lib/python3.6/site-packages (from seaborn) (3.3.4)
Requirement already satisfied: scipy>=1.0 in /media/cat/4TBSSD/anaconda3/envs/simba3/lib/python3.6/site-packages (from seaborn) (1.1.0)
Requirement already satisfied: pandas>=0.23 in /media/cat/4TBSSD/anaconda3/envs/simba3/lib/python3.6/site-packages (from seaborn) (0.25.3)
Requirement already satisfied: numpy>=1.15 in /media/cat/4TBSSD/anaconda3/envs/simba3/lib/python3.6/site-packages (from seaborn) (1.18.1)
Requirement already satisfied: cycler>=0.10 in /media/cat/4TBSSD/anaconda3/envs/simba3/lib/python3.6/site-packages (from matplotlib>=2.2->seaborn) (0.11.0)
Requirement already satisfied: pyparsing!=2.0.4,!=2.1.2,!=2.1.6,>=2.0.3 in /media/cat/4TBSSD/anaconda3/envs/simba3/lib/python3.6/site-packages (from matplotlib>=2.2->seaborn) (3.0.6)
Requirement already satisfied: pillow>=6.2.0 in /media/cat/4TBSSD/anaconda3/envs/simba3/lib/python3.6/site-packages (from matplotlib>=2.2->seaborn) (8.4.0)
Requirement already satisfied: python-dateutil>=2.1 in /media/cat/4TBSSD/anaconda3/envs/simba3/lib/python3.6/site-packages (from matplotlib>=2.2->seaborn) (2.8.2)
Requirement already satisfied: kiwisolver>=1.0.1 in /media/cat/4TBSSD/anaconda3/envs/simba3/lib/python3.6/site-packages (from matplotlib>=2.2->seaborn) (1.3.1)
Requirement already satisfied: pytz>=2017.2 in /media/cat/4TBSSD/anaconda3/envs/simba3/lib/python3.6/site-packages (from pandas>=0.23->seaborn) (2021.3)
Requirement already satisfied: six>=1.5 in /media/cat/4TBSSD/anaconda3/envs/simba3/lib/python3.6/site-packages (from python-dateutil>=2.1->matplotlib>=2.2->seaborn) (1.16.0)
Installing collected packages: seaborn
Attempting uninstall: seaborn
Found existing installation: seaborn 0.9.0
Uninstalling seaborn-0.9.0:
Successfully uninstalled seaborn-0.9.0
ERROR: pip's dependency resolver does not currently take into account all the packages that are installed. This behaviour is the source of the following dependency conflicts.
simba-uw-tf-dev 0.88.8 requires wxpython==4.0.4, which is not installed.
simba-uw-tf-dev 0.88.8 requires matplotlib==3.0.3, but you have matplotlib 3.3.4 which is incompatible.
simba-uw-tf-dev 0.88.8 requires Pillow==5.4.1, but you have pillow 8.4.0 which is incompatible.
simba-uw-tf-dev 0.88.8 requires seaborn==0.9.0, but you have seaborn 0.11.2 which is incompatible.
Successfully installed seaborn-0.11.2(simba3) cat@cat-Precision-T3610:~$ simba
Traceback (most recent call last):
File "/media/cat/4TBSSD/anaconda3/envs/simba3/bin/simba", line 5, in <module>
from simba.SimBA import main
File "/media/cat/4TBSSD/anaconda3/envs/simba3/lib/python3.6/site-packages/simba/SimBA.py", line 6, in <module>
import seaborn as sns
File "/media/cat/4TBSSD/anaconda3/envs/simba3/lib/python3.6/site-packages/seaborn/__init__.py", line 2, in <module>
import matplotlib as mpl
File "/media/cat/4TBSSD/anaconda3/envs/simba3/lib/python3.6/site-packages/matplotlib/__init__.py", line 141, in <module>
from . import cbook, rcsetup
File "/media/cat/4TBSSD/anaconda3/envs/simba3/lib/python3.6/site-packages/matplotlib/rcsetup.py", line 25, in <module>
from matplotlib.fontconfig_pattern import parse_fontconfig_pattern
File "/media/cat/4TBSSD/anaconda3/envs/simba3/lib/python3.6/site-packages/matplotlib/fontconfig_pattern.py", line 19, in <module>
from pyparsing import (Literal, ZeroOrMore, Optional, Regex, StringEnd,
File "/media/cat/4TBSSD/anaconda3/envs/simba3/lib/python3.6/site-packages/pyparsing/__init__.py", line 130, in <module>
__version__ = __version_info__.__version__
AttributeError: 'version_info' object has no attribute '__version__'
(simba3) cat@cat-Precision-T3610:~$ Here are the installed packages:
(simba3) cat@cat-Precision-T3610:~$ pip list
Package Version
-------------------- --------
attrs 21.2.0
Brotli 1.0.9
cefpython3 66.0
click 8.0.3
cloudpickle 2.0.0
colour 0.1.5
cycler 0.11.0
dash 1.14.0
dash-color-picker 0.0.1
dash-colorscales 0.0.4
dash-core-components 1.10.2
dash-html-components 1.0.3
dash-renderer 1.6.0
dash-table 4.9.0
dask 2021.3.0
dataclasses 0.8
decorator 4.4.2
dtreeviz 0.8.1
eli5 0.10.1
Flask 2.0.2
Flask-Compress 1.10.1
future 0.18.2
graphviz 0.11
h5py 2.9.0
imageio 2.13.3
imbalanced-learn 0.8.1
imblearn 0.0
imgaug 0.4.0
importlib-metadata 4.8.3
imutils 0.5.2
itsdangerous 2.0.1
Jinja2 3.0.3
joblib 1.1.0
kiwisolver 1.3.1
llvmlite 0.31.0
MarkupSafe 2.0.1
matplotlib 3.0.3
networkx 2.5.1
numba 0.48.0
numexpr 2.6.9
numpy 1.18.1
opencv-python 3.4.5.20
packaging 21.3
pandas 0.25.3
patsy 0.5.2
Pillow 5.4.1
pip 21.3.1
plotly 4.9.0
pyarrow 0.17.1
pyparsing 3.0.6
python-dateutil 2.8.2
pytz 2021.3
PyWavelets 1.1.1
PyYAML 5.3.1
retrying 1.3.3
scikit-image 0.14.2
scikit-learn 0.22.2
scipy 1.1.0
seaborn 0.9.0
setuptools 58.0.4
shap 0.35.0
Shapely 1.7.0
Simba-UW-tf-dev 0.88.8
six 1.16.0
statsmodels 0.9.0
tables 3.6.1
tabulate 0.8.3
threadpoolctl 3.0.0
toolz 0.11.2
tqdm 4.30.0
typing_extensions 4.0.1
Werkzeug 2.0.2
wheel 0.37.0
wxPython 4.0.4
xgboost 0.90
yellowbrick 0.9.1
zipp 3.6.0
(simba3) cat@cat-Precision-T3610:~$ conda list
# packages in environment at /media/cat/4TBSSD/anaconda3/envs/simba3:
#
# Name Version Build Channel
_libgcc_mutex 0.1 conda_forge conda-forge
_openmp_mutex 4.5 1_gnu conda-forge
attrs 21.2.0 pypi_0 pypi
brotli 1.0.9 pypi_0 pypi
ca-certificates 2020.10.14 0 anaconda
cairo 1.16.0 h18b612c_1001 conda-forge
cefpython3 66.0 pypi_0 pypi
click 8.0.3 pypi_0 pypi
cloudpickle 2.0.0 pypi_0 pypi
colour 0.1.5 pypi_0 pypi
cycler 0.11.0 pypi_0 pypi
dash 1.14.0 pypi_0 pypi
dash-color-picker 0.0.1 pypi_0 pypi
dash-colorscales 0.0.4 pypi_0 pypi
dash-core-components 1.10.2 pypi_0 pypi
dash-html-components 1.0.3 pypi_0 pypi
dash-renderer 1.6.0 pypi_0 pypi
dash-table 4.9.0 pypi_0 pypi
dask 2021.3.0 pypi_0 pypi
dataclasses 0.8 pypi_0 pypi
decorator 4.4.2 pypi_0 pypi
dtreeviz 0.8.1 pypi_0 pypi
eli5 0.10.1 pypi_0 pypi
expat 2.2.10 he6710b0_2 anaconda
flask 2.0.2 pypi_0 pypi
flask-compress 1.10.1 pypi_0 pypi
fontconfig 2.13.1 hba837de_1005 conda-forge
freetype 2.10.4 h5ab3b9f_0 anaconda
fribidi 1.0.10 h7b6447c_0 anaconda
future 0.18.2 pypi_0 pypi
gettext 0.19.8.1 h9b4dc7a_1 anaconda
glib 2.66.1 h92f7085_0 anaconda
graphite2 1.3.14 h23475e2_0 anaconda
gst-plugins-base 1.14.0 h8213a91_2
gstreamer 1.14.0 h28cd5cc_2
h5py 2.9.0 pypi_0 pypi
harfbuzz 2.4.0 hca77d97_1 anaconda
icu 58.2 he6710b0_3 anaconda
imageio 2.13.3 pypi_0 pypi
imbalanced-learn 0.8.1 pypi_0 pypi
imblearn 0.0 pypi_0 pypi
imgaug 0.4.0 pypi_0 pypi
importlib-metadata 4.8.3 pypi_0 pypi
imutils 0.5.2 pypi_0 pypi
itsdangerous 2.0.1 pypi_0 pypi
jinja2 3.0.3 pypi_0 pypi
joblib 1.1.0 pypi_0 pypi
jpeg 9b habf39ab_1 anaconda
kiwisolver 1.3.1 pypi_0 pypi
libffi 3.3 he6710b0_2 anaconda
libgcc-ng 11.2.0 h1d223b6_11 conda-forge
libglu 9.0.0 hf484d3e_1 anaconda
libgomp 11.2.0 h1d223b6_11 conda-forge
libpng 1.6.37 hbc83047_0 anaconda
libstdcxx-ng 9.1.0 hdf63c60_0 anaconda
libuuid 2.32.1 h7f98852_1000 conda-forge
libxcb 1.14 h7b6447c_0 anaconda
libxml2 2.9.10 hb55368b_3 anaconda
libzlib 1.2.11 h36c2ea0_1013 conda-forge
llvmlite 0.31.0 pypi_0 pypi
markupsafe 2.0.1 pypi_0 pypi
matplotlib 3.0.3 pypi_0 pypi
ncurses 5.9 10 conda-forge
networkx 2.5.1 pypi_0 pypi
numba 0.48.0 pypi_0 pypi
numexpr 2.6.9 pypi_0 pypi
numpy 1.18.1 pypi_0 pypi
opencv-python 3.4.5.20 pypi_0 pypi
openssl 1.0.2u h7b6447c_0 anaconda
packaging 21.3 pypi_0 pypi
pandas 0.25.3 pypi_0 pypi
pango 1.45.3 hd140c19_0 anaconda
patsy 0.5.2 pypi_0 pypi
pcre 8.44 he6710b0_0 anaconda
pillow 5.4.1 pypi_0 pypi
pip 21.3.1 pyhd8ed1ab_0 conda-forge
pixman 0.38.0 h516909a_1003 conda-forge
plotly 4.9.0 pypi_0 pypi
pyarrow 0.17.1 pypi_0 pypi
pyparsing 3.0.6 pypi_0 pypi
python 3.6.0 2 conda-forge
python-dateutil 2.8.2 pypi_0 pypi
python-graphviz 0.11 pypi_0 pypi
python_abi 3.6 2_cp36m conda-forge
pytz 2021.3 pypi_0 pypi
pywavelets 1.1.1 pypi_0 pypi
pyyaml 5.3.1 pypi_0 pypi
readline 6.2 0 conda-forge
retrying 1.3.3 pypi_0 pypi
scikit-image 0.14.2 pypi_0 pypi
scikit-learn 0.22.2 pypi_0 pypi
scipy 1.1.0 pypi_0 pypi
seaborn 0.9.0 pypi_0 pypi
setuptools 58.0.4 py36h5fab9bb_2 conda-forge
shap 0.35.0 pypi_0 pypi
shapely 1.7.0 pypi_0 pypi
simba-uw-tf-dev 0.88.8 pypi_0 pypi
six 1.16.0 pypi_0 pypi
sqlite 3.13.0 1 conda-forge
statsmodels 0.9.0 pypi_0 pypi
tables 3.6.1 pypi_0 pypi
tabulate 0.8.3 pypi_0 pypi
threadpoolctl 3.0.0 pypi_0 pypi
tk 8.5.19 2 conda-forge
toolz 0.11.2 pypi_0 pypi
tqdm 4.30.0 pypi_0 pypi
typing-extensions 4.0.1 pypi_0 pypi
werkzeug 2.0.2 pypi_0 pypi
wheel 0.37.0 pyhd8ed1ab_1 conda-forge
wxpython 4.0.4 py36hc99224d_0
xgboost 0.90 pypi_0 pypi
xorg-kbproto 1.0.7 h7f98852_1002 conda-forge
xorg-libice 1.0.10 h7f98852_0 conda-forge
xorg-libsm 1.2.3 hd9c2040_1000 conda-forge
xorg-libx11 1.7.2 h7f98852_0 conda-forge
xorg-libxext 1.3.4 h7f98852_1 conda-forge
xorg-libxrender 0.9.10 h7f98852_1003 conda-forge
xorg-renderproto 0.11.1 h7f98852_1002 conda-forge
xorg-xextproto 7.3.0 h7f98852_1002 conda-forge
xorg-xproto 7.0.31 h7f98852_1007 conda-forge
xz 5.2.5 h516909a_1 conda-forge
yellowbrick 0.9.1 pypi_0 pypi
zipp 3.6.0 pypi_0 pypi
zlib 1.2.11 h36c2ea0_1013 conda-forge
(simba3) cat@cat-Precision-T3610:~$ It seems to be at pyparsing - from pyparsing import (Literal, ZeroOrMore, Optional, Regex, StringEnd - a requirement of matplotlib. I don't know which version I have for that but will check.
sronilsson
commented
2 years ago Might be a Linux dependency för mpl.. try reinstall pyparsing?
catubc
commented
2 years ago Ok, great downgraded to 3.0.0., now I have this issue:
(simba3) cat@cat-Precision-T3610:~$ simba
Traceback (most recent call last):
File "/media/cat/4TBSSD/anaconda3/envs/simba3/bin/simba", line 8, in <module>
sys.exit(main())
File "/media/cat/4TBSSD/anaconda3/envs/simba3/lib/python3.6/site-packages/simba/SimBA.py", line 7851, in main
app = App()
File "/media/cat/4TBSSD/anaconda3/envs/simba3/lib/python3.6/site-packages/simba/SimBA.py", line 7684, in __init__
img = PhotoImage(file=os.path.join(scriptdir,'golden.png'))
File "/media/cat/4TBSSD/anaconda3/envs/simba3/lib/python3.6/tkinter/__init__.py", line 3539, in __init__
Image.__init__(self, 'photo', name, cnf, master, **kw)
File "/media/cat/4TBSSD/anaconda3/envs/simba3/lib/python3.6/tkinter/__init__.py", line 3495, in __init__
self.tk.call(('image', 'create', imgtype, name,) + options)
_tkinter.TclError: couldn't recognize data in image file "/media/cat/4TBSSD/anaconda3/envs/simba3/lib/python3.6/site-packages/simba/golden.png"
(simba3) cat@cat-Precision-T3610:~$
Apparently, it's a Pillow issue, but not sure.
catubc
commented
2 years ago Ok, well, it finally works, not clear what did it.
FYI: I did use conda to install wxpython, and that was so much easier
conda install -c anaconda wxpython==4.0.4
I think another of the issues might have been that I was using python=3.6 instead of 3.6.10 which perhaps came with a different version of tk.
I will try to use simba a bit , and if it's useful, will reproduce the install in the cloud now. Fingers crossed it works. I'll post any other install issues in case others encounter them. Thanks so much!
sronilsson
commented
2 years ago Yes it's having trouble reading the splash screen image in final rows of Simba.py, it's using PIL. The file it has trouble reading is golden.png. Ive seen it a long time ago and thought it was dealt with but might be be related to OS version. I will insert some catch to not display splash if catching this error..
catubc
commented
2 years ago Yes, i reinstalled python to 3.6.10 and tkinter upgraded, perhaps that's what solved the last issue.
Describe the bug I am trying to install simba but getting a wxMediaCtrl error.
To Reproduce Run either of these commands, they all get stuck on the error python setup.py install pip install . pip install simba-uw-tf-dev --no-cache-dir
Desktop (please complete the following information): Linux 18.04