Error installing and opening SimBA

fon215 commented 2 years ago

Describe the bug

I am installing SimBA on my computer to be used with DeepLabCut to perform automated behavioral analysis with mice to study pain and itch behaviors for a lab. I have encountered some problems during the installation process. First of all, I am not able to extract the files in FFmpeg in step 6 of the directions for installing FFmpeg. Could you let me know how to complete these steps and extract the files? I have included screenshots showing this as well.

Also, I am having trouble launching simba once I complete the installation steps.

I have highlighted here the command line with the prompts I used and the errors I received. Could you help me figure out what I am doing wrong so that I am able to install the program? I will also include a screenshot of the steps for installation that I was following.

(base) C:\Users\maf315>conda activate simbaenv

(simbaenv) C:\Users\maf315>pip install pip==19.0.1 Collecting pip==19.0.1 Using cached pip-19.0.1-py2.py3-none-any.whl (1.4 MB) Installing collected packages: pip Attempting uninstall: pip Found existing installation: pip 21.2.2 Uninstalling pip-21.2.2: Successfully uninstalled pip-21.2.2 ERROR: Could not install packages due to an OSError: [WinError 5] Access is denied: 'C:\Users\maf315\AppData\Local\Temp\pip-uninstall-g4k_1xih\pip.exe' Consider using the --user option or check the permissions.

(simbaenv) C:\Users\maf315>pip uninstall shapely Uninstalling Shapely-1.7.0: Would remove: c:\tools\anaconda3\envs\simbaenv\lib\site-packages\shapely-1.7.0.dist-info* c:\tools\anaconda3\envs\simbaenv\lib\site-packages\shapely* Proceed (y/n)? y Successfully uninstalled Shapely-1.7.0

(simbaenv) C:\Users\maf315>conda install -c conda-forge shapely Collecting package metadata (current_repodata.json): done Solving environment: done

Package Plan

environment location: C:\TOOLS\Anaconda3\envs\simbaenv

added / updated specs:

shapely

The following packages will be downloaded:

package                    |            build
---------------------------|-----------------
geos-3.8.0                 |       h33f27b4_0         905 KB
intel-openmp-2022.1.0      |    h57928b3_3787         3.7 MB  conda-forge
libblas-3.9.0              |     14_win64_mkl         5.3 MB  conda-forge
libcblas-3.9.0             |     14_win64_mkl         5.3 MB  conda-forge
liblapack-3.9.0            |     14_win64_mkl         5.3 MB  conda-forge
numpy-1.19.5               |   py36h4b40d73_2         4.9 MB  conda-forge
python_abi-3.6             |          2_cp36m           4 KB  conda-forge
shapely-1.7.1              |   py36h06580b3_0         369 KB
tbb-2021.5.0               |       h2d74725_1         148 KB  conda-forge
------------------------------------------------------------
                                       Total:        25.7 MB

The following NEW packages will be INSTALLED:

geos pkgs/main/win-64::geos-3.8.0-h33f27b4_0 intel-openmp conda-forge/win-64::intel-openmp-2022.1.0-h57928b3_3787 libblas conda-forge/win-64::libblas-3.9.0-14_win64_mkl libcblas conda-forge/win-64::libcblas-3.9.0-14_win64_mkl liblapack conda-forge/win-64::liblapack-3.9.0-14_win64_mkl mkl conda-forge/win-64::mkl-2022.0.0-h0e2418a_796 numpy conda-forge/win-64::numpy-1.19.5-py36h4b40d73_2 python_abi conda-forge/win-64::python_abi-3.6-2_cp36m shapely pkgs/main/win-64::shapely-1.7.1-py36h06580b3_0 tbb conda-forge/win-64::tbb-2021.5.0-h2d74725_1

Proceed ([y]/n)? y

Downloading and Extracting Packages libcblas-3.9.0 | 5.3 MB | ############################################################################ | 100% python_abi-3.6 | 4 KB | ############################################################################ | 100% geos-3.8.0 | 905 KB | ############################################################################ | 100% tbb-2021.5.0 | 148 KB | ############################################################################ | 100% numpy-1.19.5 | 4.9 MB | ############################################################################ | 100% libblas-3.9.0 | 5.3 MB | ############################################################################ | 100% intel-openmp-2022.1. | 3.7 MB | ############################################################################ | 100% liblapack-3.9.0 | 5.3 MB | ############################################################################ | 100% shapely-1.7.1 | 369 KB | ############################################################################ | 100% Preparing transaction: done Verifying transaction: done Executing transaction: done

(simbaenv) C:\Users\maf315>simba Traceback (most recent call last): File "c:\tools\anaconda3\envs\simbaenv\lib\runpy.py", line 193, in _run_module_as_main "main", mod_spec) File "c:\tools\anaconda3\envs\simbaenv\lib\runpy.py", line 85, in _run_code exec(code, run_globals) File "C:\TOOLS\Anaconda3\envs\simbaenv\Scripts\simba.exe__main.py", line 5, in File "c:\tools\anaconda3\envs\simbaenv\lib\site-packages\simba\SimBA.py", line 50, in from simba.train_multiple_models_from_meta import * File "c:\tools\anaconda3\envs\simbaenv\lib\site-packages\simba\train_multiple_models_from_meta.py", line 10, in from imblearn.combine import SMOTEENN File "c:\tools\anaconda3\envs\simbaenv\lib\site-packages\imblearn\init.py", line 53, in from . import ensemble File "c:\tools\anaconda3\envs\simbaenv\lib\site-packages\imblearn\ensemble\init__.py", line 6, in from ._easy_ensemble import EasyEnsembleClassifier File "c:\tools\anaconda3\envs\simbaenv\lib\site-packages\imblearn\ensemble_easy_ensemble.py", line 21, in from ..pipeline import Pipeline File "c:\tools\anaconda3\envs\simbaenv\lib\site-packages\imblearn\pipeline.py", line 18, in from sklearn.utils.metaestimators import available_if ImportError: cannot import name 'available_if'

Expected behavior I expected to follow the installation steps and for the software to open successfully.

Screenshots

Desktop (Lenovo P340 Workstation (ThinkStation) - Type 30DH (Tower Form Factor)):

OS build: 19043.1706 (Processor: Intel(R) Core(TM) i9-10900K CPU @ 3.70GHz 3.70 GHz)
Python Version 3.10.4
Are you using anaconda? - Yes

Additional context I am working through a remote desktop while using this software.

sronilsson commented 2 years ago

Hi @fon215 ! Thanks for reporting - I had a similar issue reported very recently by @m-migliaro. The solution for them to not downgrade pip to version 19.0.1, and stick with version 21.2.2. Can you check if this also works for you?

fon215 commented 2 years ago

That worked! Thank you so much!

fon215 commented 2 years ago

Hi @fon215 ! Thanks for reporting - I had a similar issue reported very recently by @m-migliaro. The solution for them to not downgrade pip to version 19.0.1, and stick with version 21.2.2. Can you check if this also works for you?

That helped me open SimBA, however, I am still having trouble installing FFmpeg. Could someone direct me on getting past the sixth step listed in the screenshot I provided?

sronilsson commented 2 years ago

Hi @fon215 - I think you need to install a program that allows you to uncompress the 7Zip file, either winzip, winrar, or 7-zip (https://www.7-zip.org/)

fon215 commented 2 years ago

Okay, thank you.

sgoldenlab / simba

Error installing and opening SimBA #186

Package Plan