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sgoldenlab / simba

SimBA (Simple Behavioral Analysis), a pipeline and GUI for developing supervised behavioral classifiers
https://simba-uw-tf-dev.readthedocs.io/
GNU General Public License v3.0
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issue with 1 fps video processing #272

Closed DorianBattivelli closed 10 months ago

DorianBattivelli commented 1 year ago

Hello,

Working on Windows 10, SimBA v.1.63.6. I'm working on CSV files from single animal DLC project.

I'm once again facing an issue about 1 fps video. Everything runs well when starting the creation of a new project: import videos, CSV (with interpolation, smoother correction) and setting of video parameters. But as I click to set the features of outlier correction, terminal returns: Simba

Last time, issue was happening for drawing ROIs, basically because I did not properly run outlier corrections. Now, this happens even before I had a chance to run it. I tried to go ahead, and I can proceed (outlier correction concludes), but then at each step (ROIs drawing) I get this message for every video. Given the time it takes me to draw ROIs and set the features, I'd like to be sure that my project is not wrong somehow before going ahead...

FYI, here the videos.info file: Simba

Everything looks good to me here... Thank you for the help! Best

sronilsson commented 1 year ago

Hi @DorianBattivelli!

Yes it's a warning I don't think you will see any issues. Are you just working with ROIs, no classifiers?

To be sure, can you test on a couple of videos before doing the entire analysis?

The warning is shown because of classifier issues downstream. If you want to calculate e.g. the movement of the animal in 500 millisecond rolling bins, then we can't because that would be 0.5 frames and classifier creation will break.

DorianBattivelli commented 1 year ago

Ok, good news. Indeed I intend to use only ROIs, so it should be good. I keep you posted,

Thank you, Best,