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sgoldenlab / simba

SimBA (Simple Behavioral Analysis), a pipeline and GUI for developing supervised behavioral classifiers
https://simba-uw-tf-dev.readthedocs.io/
GNU General Public License v3.0
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Outlier Correction to ROI error #65

Closed JIUthor closed 3 years ago

JIUthor commented 4 years ago

When I run outlier correction, the SimBA window shows that the outlier correction has been completed but when I step over to the ROI window, I receive a message that outlier correction has not been completed. I assume this is a type of formatting issue but unsure, any suggestion? Below is a snip of the SimBA window.

Using Anaconda on Windows 10. Simba1

sgoldenlab commented 4 years ago

Hi @JIUthor - it seems like SimBA can't locate either your pose-estimation CSVs or your outlier corrected pose estimation CSVs. These should be in your project_folder/csv/input_csv and project_folder/csv/outlier_corrected_movement_location folders, respectively. If you go to these folders in your project directory, can you see CSV files with the same file names as the videos you are trying to analyse?

JIUthor commented 4 years ago

@sgoldenlab When I go to said locations, along with any folders within the csv folder, they all show they are empty.

JIUthor commented 4 years ago

@sgoldenlab I was curious if you knew what I should do next to try and address this issue?

sgoldenlab commented 4 years ago

Hey @JIUthor - First! sorry I had missed this. Thanks for the bump.

If I understand correctly, your project_folder/csv/input_csv folder is empty. This means something went astray when you imported your tracking files into your SimBA project.

When you imported your tracking files - and used this menu - did you see any error msgs being printer, either in the main SimBA terminal window, or the windows terminal?

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