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sgosline / hyphalnet

Basic implementation of community detection in networks
MIT License
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Compute distances within and across hyphal networks for AML/CPTAC data #11

Open sgosline opened 4 years ago

sgosline commented 4 years ago

For the pan-cancer data we can compute 'distances' between the various files. We need these distances to better assess patients activity. See below. https://github.com/sgosline/hyphalnet/blob/a77ae88671039f38c3632827004adfa8ab85ec2b/examples/cancerProtFeatures/panCancerTest.py#L132

Update the significant genes script to compute these values.

sgosline commented 4 years ago

Update: this should also compute distances between networks generated via mutations and proteomics. This will require combining the two scripts into a single script to create two hyphae - one derived from mutations and one derived from proteomics.