sgsinclair
commented
7 years ago What kind of file are you trying to upload? Can you attach it here? (Or something as small as possible that still fails?)
Closed yshussain closed 7 years ago
sgsinclair
commented
7 years ago What kind of file are you trying to upload? Can you attach it here? (Or something as small as possible that still fails?)
yshussain
commented
7 years ago hamletfulltext.pdf It's happened on every PDF I've tried. Here's an example.
sgsinclair
commented
7 years ago Hmm, no problem locally 
It seems to load fine on the server as well: http://voyant-tools.org/?corpus=8ac375765d6451706e6e6022c65a3275
I notice that there are a couple of versions of some of the libs (like pdfbox-1.8.10 and pdfbox-2.0.1). Could you please try cleaning out some of the older libs, restarting your server, and seeing if that helps?
yshussain
commented
7 years ago Sorry for the slow response. I've deleted the pdfbox jars and receive the following error
*** Starting Voyant Server – Web page will open automatically when ready ***
Using Free AdminPort=34000
Server Starting
2017-03-23 08:12:19.012:INFO::main: Logging initialized @1116ms
Jetty Version: 9.3.z-SNAPSHOT
http://*:8888
Jetty starting up ... please wait
2017-03-23 08:12:19.896:INFO:oejs.Server:main: jetty-9.3.z-SNAPSHOT
2017-03-23 08:12:51.615:WARN:oeja.AnnotationConfiguration:main: ServletContainerInitializers: detected. Class hierarchy: empty
2017-03-23 08:12:51.991:WARN:oejs.SecurityHandler:main: ServletContext@o.e.j.w.WebAppContext@1b26f7b2{/,file:///home/ucsbcollab/Applications/VoyantServer/_app/,STARTING} has uncovered http methods for path: /
2017-03-23 08:12:52.088:INFO:oejsh.ContextHandler:main: Started o.e.j.w.WebAppContext@1b26f7b2{/,file:///home/ucsbcollab/Applications/VoyantServer/_app/,AVAILABLE}
2017-03-23 08:12:52.156:INFO:oejs.ServerConnector:main: Started ServerConnector@424a4f04{HTTP/1.1,[http/1.1]}{0.0.0.0:8888}
2017-03-23 08:12:52.158:INFO:oejs.Server:main: Started @34265ms
... Jetty has started.
Trombone FileStorage location: /home/ucsbcollab/Applications/VoyantServer/data/trombone5_2
Mar 23, 2017 8:13:14 AM org.apache.cxf.jaxrs.utils.JAXRSUtils logMessageHandlerProblem
SEVERE: No message body writer has been found for class org.apache.cxf.jaxrs.ext.multipart.MultipartBody, ContentType: multipart/form-data
Mar 23, 2017 8:13:14 AM org.apache.cxf.phase.PhaseInterceptorChain doDefaultLogging
WARNING: Interceptor for {http://localhost:8080/processHeaderDocument}WebClient has thrown exception, unwinding now
org.apache.cxf.interceptor.Fault: No message body writer has been found for class org.apache.cxf.jaxrs.ext.multipart.MultipartBody, ContentType: multipart/form-data
at org.apache.cxf.jaxrs.client.WebClient$BodyWriter.doWriteBody(WebClient.java:1220)
at org.apache.cxf.jaxrs.client.AbstractClient$AbstractBodyWriter.handleMessage(AbstractClient.java:1044)
at org.apache.cxf.phase.PhaseInterceptorChain.doIntercept(PhaseInterceptorChain.java:307)
at org.apache.cxf.jaxrs.client.AbstractClient.doRunInterceptorChain(AbstractClient.java:623)
at org.apache.cxf.jaxrs.client.WebClient.doChainedInvocation(WebClient.java:1084)
at org.apache.cxf.jaxrs.client.WebClient.doInvoke(WebClient.java:883)
at org.apache.cxf.jaxrs.client.WebClient.doInvoke(WebClient.java:854)
at org.apache.cxf.jaxrs.client.WebClient.invoke(WebClient.java:320)
at org.apache.cxf.jaxrs.client.WebClient.post(WebClient.java:329)
at org.apache.tika.parser.journal.GrobidRESTParser.parse(GrobidRESTParser.java:77)
at org.apache.tika.parser.journal.JournalParser.parse(JournalParser.java:60)
at org.apache.tika.parser.CompositeParser.parse(CompositeParser.java:280)
at org.apache.tika.parser.CompositeParser.parse(CompositeParser.java:280)
at org.apache.tika.parser.AutoDetectParser.parse(AutoDetectParser.java:120)
at org.voyanttools.trombone.input.extract.TikaExtractor$ExtractableTikaInputSource.getInputStream(TikaExtractor.java:137)
at org.voyanttools.trombone.storage.file.FileStoredDocumentSourceStorage.getStoredDocumentSource(FileStoredDocumentSourceStorage.java:115)
at org.voyanttools.trombone.input.extract.StoredDocumentSourceExtractor.getExtractedStoredDocumentSource(StoredDocumentSourceExtractor.java:145)
at org.voyanttools.trombone.input.extract.StoredDocumentSourceExtractor$CallableExtractor.call(StoredDocumentSourceExtractor.java:166)
at org.voyanttools.trombone.input.extract.StoredDocumentSourceExtractor$CallableExtractor.call(StoredDocumentSourceExtractor.java:1)
at java.util.concurrent.FutureTask.run(FutureTask.java:266)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
at java.lang.Thread.run(Thread.java:745)
Caused by: javax.ws.rs.ProcessingException: No message body writer has been found for class org.apache.cxf.jaxrs.ext.multipart.MultipartBody, ContentType: multipart/form-data
at org.apache.cxf.jaxrs.client.AbstractClient.reportMessageHandlerProblem(AbstractClient.java:740)
at org.apache.cxf.jaxrs.client.AbstractClient.writeBody(AbstractClient.java:469)
at org.apache.cxf.jaxrs.client.WebClient$BodyWriter.doWriteBody(WebClient.java:1215)
... 22 more
Caused by: java.net.ConnectException: Connection refused (Connection refused)
at java.net.PlainSocketImpl.socketConnect(Native Method)
at java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350)
at java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206)
at java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188)
at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392)
at java.net.Socket.connect(Socket.java:589)
at sun.net.NetworkClient.doConnect(NetworkClient.java:175)
at sun.net.www.http.HttpClient.openServer(HttpClient.java:432)
at sun.net.www.http.HttpClient.openServer(HttpClient.java:527)
at sun.net.www.http.HttpClient.<init>(HttpClient.java:211)
at sun.net.www.http.HttpClient.New(HttpClient.java:308)
at sun.net.www.http.HttpClient.New(HttpClient.java:326)
at sun.net.www.protocol.http.HttpURLConnection.getNewHttpClient(HttpURLConnection.java:1202)
at sun.net.www.protocol.http.HttpURLConnection.plainConnect0(HttpURLConnection.java:1138)
at sun.net.www.protocol.http.HttpURLConnection.plainConnect(HttpURLConnection.java:1032)
at sun.net.www.protocol.http.HttpURLConnection.connect(HttpURLConnection.java:966)
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream0(HttpURLConnection.java:1316)
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream(HttpURLConnection.java:1291)
at org.apache.cxf.transport.http.URLConnectionHTTPConduit$URLConnectionWrappedOutputStream.setupWrappedStream(URLConnectionHTTPConduit.java:174)
at org.apache.cxf.transport.http.HTTPConduit$WrappedOutputStream.handleHeadersTrustCaching(HTTPConduit.java:1302)
at org.apache.cxf.transport.http.HTTPConduit$WrappedOutputStream.onFirstWrite(HTTPConduit.java:1258)
at org.apache.cxf.transport.http.URLConnectionHTTPConduit$URLConnectionWrappedOutputStream.onFirstWrite(URLConnectionHTTPConduit.java:201)
at org.apache.cxf.io.AbstractWrappedOutputStream.write(AbstractWrappedOutputStream.java:47)
at org.apache.cxf.io.AbstractThresholdOutputStream.unBuffer(AbstractThresholdOutputStream.java:89)
at org.apache.cxf.io.AbstractThresholdOutputStream.write(AbstractThresholdOutputStream.java:63)
at javax.activation.DataHandler.writeTo(DataHandler.java:309)
at org.apache.cxf.jaxrs.provider.MultipartProvider.writeTo(MultipartProvider.java:266)
at org.apache.cxf.jaxrs.utils.JAXRSUtils.writeMessageBody(JAXRSUtils.java:1363)
at org.apache.cxf.jaxrs.client.AbstractClient.writeBody(AbstractClient.java:455)
... 23 more
2017-03-23 08:13:14.189:WARN:/:qtp1044036744-13: trombone: ERROR: An error occurred during multi-threaded document expansion.
java.lang.IllegalStateException: An error occurred during multi-threaded document expansion.
at org.voyanttools.trombone.input.extract.StoredDocumentSourceExtractor.getExtractedStoredDocumentSources(StoredDocumentSourceExtractor.java:99)
at org.voyanttools.trombone.tool.build.DocumentExtractor.run(DocumentExtractor.java:89)
at org.voyanttools.trombone.tool.build.RealCorpusCreator.run(RealCorpusCreator.java:93)
at org.voyanttools.trombone.tool.corpus.CorpusCreator.run(CorpusCreator.java:49)
at org.voyanttools.trombone.tool.utils.ToolRunner.run(ToolRunner.java:130)
at org.voyanttools.trombone.Controller.run(Controller.java:110)
at org.voyanttools.voyant.Trombone.runTromboneController(Trombone.java:274)
at org.voyanttools.voyant.Trombone.doRequest(Trombone.java:249)
at org.voyanttools.voyant.Trombone.doRequest(Trombone.java:131)
at org.voyanttools.voyant.Trombone.doPost(Trombone.java:72)
at javax.servlet.http.HttpServlet.service(HttpServlet.java:707)
at javax.servlet.http.HttpServlet.service(HttpServlet.java:790)
at org.eclipse.jetty.servlet.ServletHolder.handle(ServletHolder.java:835)
at org.eclipse.jetty.servlet.ServletHandler.doHandle(ServletHandler.java:583)
at org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:143)
at org.eclipse.jetty.security.SecurityHandler.handle(SecurityHandler.java:548)
at org.eclipse.jetty.server.session.SessionHandler.doHandle(SessionHandler.java:226)
at org.eclipse.jetty.server.handler.ContextHandler.doHandle(ContextHandler.java:1158)
at org.eclipse.jetty.servlet.ServletHandler.doScope(ServletHandler.java:511)
at org.eclipse.jetty.server.session.SessionHandler.doScope(SessionHandler.java:185)
at org.eclipse.jetty.server.handler.ContextHandler.doScope(ContextHandler.java:1090)
at org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:141)
at org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:119)
at org.eclipse.jetty.server.Server.handle(Server.java:517)
at org.eclipse.jetty.server.HttpChannel.handle(HttpChannel.java:308)
at org.eclipse.jetty.server.HttpConnection.onFillable(HttpConnection.java:242)
at org.eclipse.jetty.io.AbstractConnection$ReadCallback.succeeded(AbstractConnection.java:273)
at org.eclipse.jetty.io.FillInterest.fillable(FillInterest.java:95)
at org.eclipse.jetty.io.SelectChannelEndPoint$2.run(SelectChannelEndPoint.java:75)
at org.eclipse.jetty.util.thread.strategy.ExecuteProduceConsume.produceAndRun(ExecuteProduceConsume.java:213)
at org.eclipse.jetty.util.thread.strategy.ExecuteProduceConsume.run(ExecuteProduceConsume.java:147)
at org.eclipse.jetty.util.thread.QueuedThreadPool.runJob(QueuedThreadPool.java:654)
at org.eclipse.jetty.util.thread.QueuedThreadPool$3.run(QueuedThreadPool.java:572)
at java.lang.Thread.run(Thread.java:745)
Caused by:
java.util.concurrent.ExecutionException: java.io.IOException: Unable to parse document: FILE: hamletfulltext.pdf
at java.util.concurrent.FutureTask.report(FutureTask.java:122)
at java.util.concurrent.FutureTask.get(FutureTask.java:192)
at org.voyanttools.trombone.input.extract.StoredDocumentSourceExtractor.getExtractedStoredDocumentSources(StoredDocumentSourceExtractor.java:94)
at org.voyanttools.trombone.tool.build.DocumentExtractor.run(DocumentExtractor.java:89)
at org.voyanttools.trombone.tool.build.RealCorpusCreator.run(RealCorpusCreator.java:93)
at org.voyanttools.trombone.tool.corpus.CorpusCreator.run(CorpusCreator.java:49)
at org.voyanttools.trombone.tool.utils.ToolRunner.run(ToolRunner.java:130)
at org.voyanttools.trombone.Controller.run(Controller.java:110)
at org.voyanttools.voyant.Trombone.runTromboneController(Trombone.java:274)
at org.voyanttools.voyant.Trombone.doRequest(Trombone.java:249)
at org.voyanttools.voyant.Trombone.doRequest(Trombone.java:131)
at org.voyanttools.voyant.Trombone.doPost(Trombone.java:72)
at javax.servlet.http.HttpServlet.service(HttpServlet.java:707)
at javax.servlet.http.HttpServlet.service(HttpServlet.java:790)
at org.eclipse.jetty.servlet.ServletHolder.handle(ServletHolder.java:835)
at org.eclipse.jetty.servlet.ServletHandler.doHandle(ServletHandler.java:583)
at org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:143)
at org.eclipse.jetty.security.SecurityHandler.handle(SecurityHandler.java:548)
at org.eclipse.jetty.server.session.SessionHandler.doHandle(SessionHandler.java:226)
at org.eclipse.jetty.server.handler.ContextHandler.doHandle(ContextHandler.java:1158)
at org.eclipse.jetty.servlet.ServletHandler.doScope(ServletHandler.java:511)
at org.eclipse.jetty.server.session.SessionHandler.doScope(SessionHandler.java:185)
at org.eclipse.jetty.server.handler.ContextHandler.doScope(ContextHandler.java:1090)
at org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:141)
at org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:119)
at org.eclipse.jetty.server.Server.handle(Server.java:517)
at org.eclipse.jetty.server.HttpChannel.handle(HttpChannel.java:308)
at org.eclipse.jetty.server.HttpConnection.onFillable(HttpConnection.java:242)
at org.eclipse.jetty.io.AbstractConnection$ReadCallback.succeeded(AbstractConnection.java:273)
at org.eclipse.jetty.io.FillInterest.fillable(FillInterest.java:95)
at org.eclipse.jetty.io.SelectChannelEndPoint$2.run(SelectChannelEndPoint.java:75)
at org.eclipse.jetty.util.thread.strategy.ExecuteProduceConsume.produceAndRun(ExecuteProduceConsume.java:213)
at org.eclipse.jetty.util.thread.strategy.ExecuteProduceConsume.run(ExecuteProduceConsume.java:147)
at org.eclipse.jetty.util.thread.QueuedThreadPool.runJob(QueuedThreadPool.java:654)
at org.eclipse.jetty.util.thread.QueuedThreadPool$3.run(QueuedThreadPool.java:572)
at java.lang.Thread.run(Thread.java:745)
Caused by:
java.io.IOException: Unable to parse document: FILE: hamletfulltext.pdf
at org.voyanttools.trombone.input.extract.TikaExtractor$ExtractableTikaInputSource.getInputStream(TikaExtractor.java:139)
at org.voyanttools.trombone.storage.file.FileStoredDocumentSourceStorage.getStoredDocumentSource(FileStoredDocumentSourceStorage.java:115)
at org.voyanttools.trombone.input.extract.StoredDocumentSourceExtractor.getExtractedStoredDocumentSource(StoredDocumentSourceExtractor.java:145)
at org.voyanttools.trombone.input.extract.StoredDocumentSourceExtractor$CallableExtractor.call(StoredDocumentSourceExtractor.java:166)
at org.voyanttools.trombone.input.extract.StoredDocumentSourceExtractor$CallableExtractor.call(StoredDocumentSourceExtractor.java:1)
at java.util.concurrent.FutureTask.run(FutureTask.java:266)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
at java.lang.Thread.run(Thread.java:745)
Caused by:
org.apache.tika.exception.TikaException: Unexpected RuntimeException from org.apache.tika.parser.journal.JournalParser@3f808816
at org.apache.tika.parser.CompositeParser.parse(CompositeParser.java:282)
at org.apache.tika.parser.CompositeParser.parse(CompositeParser.java:280)
at org.apache.tika.parser.AutoDetectParser.parse(AutoDetectParser.java:120)
at org.voyanttools.trombone.input.extract.TikaExtractor$ExtractableTikaInputSource.getInputStream(TikaExtractor.java:137)
at org.voyanttools.trombone.storage.file.FileStoredDocumentSourceStorage.getStoredDocumentSource(FileStoredDocumentSourceStorage.java:115)
at org.voyanttools.trombone.input.extract.StoredDocumentSourceExtractor.getExtractedStoredDocumentSource(StoredDocumentSourceExtractor.java:145)
at org.voyanttools.trombone.input.extract.StoredDocumentSourceExtractor$CallableExtractor.call(StoredDocumentSourceExtractor.java:166)
at org.voyanttools.trombone.input.extract.StoredDocumentSourceExtractor$CallableExtractor.call(StoredDocumentSourceExtractor.java:1)
at java.util.concurrent.FutureTask.run(FutureTask.java:266)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
at java.lang.Thread.run(Thread.java:745)
Caused by:
javax.ws.rs.ProcessingException: org.apache.cxf.interceptor.Fault: No message body writer has been found for class org.apache.cxf.jaxrs.ext.multipart.MultipartBody, ContentType: multipart/form-data
at org.apache.cxf.jaxrs.client.WebClient.doResponse(WebClient.java:1140)
at org.apache.cxf.jaxrs.client.WebClient.doChainedInvocation(WebClient.java:1085)
at org.apache.cxf.jaxrs.client.WebClient.doInvoke(WebClient.java:883)
at org.apache.cxf.jaxrs.client.WebClient.doInvoke(WebClient.java:854)
at org.apache.cxf.jaxrs.client.WebClient.invoke(WebClient.java:320)
at org.apache.cxf.jaxrs.client.WebClient.post(WebClient.java:329)
at org.apache.tika.parser.journal.GrobidRESTParser.parse(GrobidRESTParser.java:77)
at org.apache.tika.parser.journal.JournalParser.parse(JournalParser.java:60)
at org.apache.tika.parser.CompositeParser.parse(CompositeParser.java:280)
at org.apache.tika.parser.CompositeParser.parse(CompositeParser.java:280)
at org.apache.tika.parser.AutoDetectParser.parse(AutoDetectParser.java:120)
at org.voyanttools.trombone.input.extract.TikaExtractor$ExtractableTikaInputSource.getInputStream(TikaExtractor.java:137)
at org.voyanttools.trombone.storage.file.FileStoredDocumentSourceStorage.getStoredDocumentSource(FileStoredDocumentSourceStorage.java:115)
at org.voyanttools.trombone.input.extract.StoredDocumentSourceExtractor.getExtractedStoredDocumentSource(StoredDocumentSourceExtractor.java:145)
at org.voyanttools.trombone.input.extract.StoredDocumentSourceExtractor$CallableExtractor.call(StoredDocumentSourceExtractor.java:166)
at org.voyanttools.trombone.input.extract.StoredDocumentSourceExtractor$CallableExtractor.call(StoredDocumentSourceExtractor.java:1)
at java.util.concurrent.FutureTask.run(FutureTask.java:266)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
at java.lang.Thread.run(Thread.java:745)
Caused by:
org.apache.cxf.interceptor.Fault: No message body writer has been found for class org.apache.cxf.jaxrs.ext.multipart.MultipartBody, ContentType: multipart/form-data
at org.apache.cxf.jaxrs.client.WebClient$BodyWriter.doWriteBody(WebClient.java:1220)
at org.apache.cxf.jaxrs.client.AbstractClient$AbstractBodyWriter.handleMessage(AbstractClient.java:1044)
at org.apache.cxf.phase.PhaseInterceptorChain.doIntercept(PhaseInterceptorChain.java:307)
at org.apache.cxf.jaxrs.client.AbstractClient.doRunInterceptorChain(AbstractClient.java:623)
at org.apache.cxf.jaxrs.client.WebClient.doChainedInvocation(WebClient.java:1084)
at org.apache.cxf.jaxrs.client.WebClient.doInvoke(WebClient.java:883)
at org.apache.cxf.jaxrs.client.WebClient.doInvoke(WebClient.java:854)
at org.apache.cxf.jaxrs.client.WebClient.invoke(WebClient.java:320)
at org.apache.cxf.jaxrs.client.WebClient.post(WebClient.java:329)
at org.apache.tika.parser.journal.GrobidRESTParser.parse(GrobidRESTParser.java:77)
at org.apache.tika.parser.journal.JournalParser.parse(JournalParser.java:60)
at org.apache.tika.parser.CompositeParser.parse(CompositeParser.java:280)
at org.apache.tika.parser.CompositeParser.parse(CompositeParser.java:280)
at org.apache.tika.parser.AutoDetectParser.parse(AutoDetectParser.java:120)
at org.voyanttools.trombone.input.extract.TikaExtractor$ExtractableTikaInputSource.getInputStream(TikaExtractor.java:137)
at org.voyanttools.trombone.storage.file.FileStoredDocumentSourceStorage.getStoredDocumentSource(FileStoredDocumentSourceStorage.java:115)
at org.voyanttools.trombone.input.extract.StoredDocumentSourceExtractor.getExtractedStoredDocumentSource(StoredDocumentSourceExtractor.java:145)
at org.voyanttools.trombone.input.extract.StoredDocumentSourceExtractor$CallableExtractor.call(StoredDocumentSourceExtractor.java:166)
at org.voyanttools.trombone.input.extract.StoredDocumentSourceExtractor$CallableExtractor.call(StoredDocumentSourceExtractor.java:1)
at java.util.concurrent.FutureTask.run(FutureTask.java:266)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
at java.lang.Thread.run(Thread.java:745)
Caused by:
javax.ws.rs.ProcessingException: No message body writer has been found for class org.apache.cxf.jaxrs.ext.multipart.MultipartBody, ContentType: multipart/form-data
at org.apache.cxf.jaxrs.client.AbstractClient.reportMessageHandlerProblem(AbstractClient.java:740)
at org.apache.cxf.jaxrs.client.AbstractClient.writeBody(AbstractClient.java:469)
at org.apache.cxf.jaxrs.client.WebClient$BodyWriter.doWriteBody(WebClient.java:1215)
at org.apache.cxf.jaxrs.client.AbstractClient$AbstractBodyWriter.handleMessage(AbstractClient.java:1044)
at org.apache.cxf.phase.PhaseInterceptorChain.doIntercept(PhaseInterceptorChain.java:307)
at org.apache.cxf.jaxrs.client.AbstractClient.doRunInterceptorChain(AbstractClient.java:623)
at org.apache.cxf.jaxrs.client.WebClient.doChainedInvocation(WebClient.java:1084)
at org.apache.cxf.jaxrs.client.WebClient.doInvoke(WebClient.java:883)
at org.apache.cxf.jaxrs.client.WebClient.doInvoke(WebClient.java:854)
at org.apache.cxf.jaxrs.client.WebClient.invoke(WebClient.java:320)
at org.apache.cxf.jaxrs.client.WebClient.post(WebClient.java:329)
at org.apache.tika.parser.journal.GrobidRESTParser.parse(GrobidRESTParser.java:77)
at org.apache.tika.parser.journal.JournalParser.parse(JournalParser.java:60)
at org.apache.tika.parser.CompositeParser.parse(CompositeParser.java:280)
at org.apache.tika.parser.CompositeParser.parse(CompositeParser.java:280)
at org.apache.tika.parser.AutoDetectParser.parse(AutoDetectParser.java:120)
at org.voyanttools.trombone.input.extract.TikaExtractor$ExtractableTikaInputSource.getInputStream(TikaExtractor.java:137)
at org.voyanttools.trombone.storage.file.FileStoredDocumentSourceStorage.getStoredDocumentSource(FileStoredDocumentSourceStorage.java:115)
at org.voyanttools.trombone.input.extract.StoredDocumentSourceExtractor.getExtractedStoredDocumentSource(StoredDocumentSourceExtractor.java:145)
at org.voyanttools.trombone.input.extract.StoredDocumentSourceExtractor$CallableExtractor.call(StoredDocumentSourceExtractor.java:166)
at org.voyanttools.trombone.input.extract.StoredDocumentSourceExtractor$CallableExtractor.call(StoredDocumentSourceExtractor.java:1)
at java.util.concurrent.FutureTask.run(FutureTask.java:266)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
at java.lang.Thread.run(Thread.java:745)
Caused by:
java.net.ConnectException: Connection refused (Connection refused)
at java.net.PlainSocketImpl.socketConnect(Native Method)
at java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350)
at java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206)
at java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188)
at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392)
at java.net.Socket.connect(Socket.java:589)
at sun.net.NetworkClient.doConnect(NetworkClient.java:175)
at sun.net.www.http.HttpClient.openServer(HttpClient.java:432)
at sun.net.www.http.HttpClient.openServer(HttpClient.java:527)
at sun.net.www.http.HttpClient.<init>(HttpClient.java:211)
at sun.net.www.http.HttpClient.New(HttpClient.java:308)
at sun.net.www.http.HttpClient.New(HttpClient.java:326)
at sun.net.www.protocol.http.HttpURLConnection.getNewHttpClient(HttpURLConnection.java:1202)
at sun.net.www.protocol.http.HttpURLConnection.plainConnect0(HttpURLConnection.java:1138)
at sun.net.www.protocol.http.HttpURLConnection.plainConnect(HttpURLConnection.java:1032)
at sun.net.www.protocol.http.HttpURLConnection.connect(HttpURLConnection.java:966)
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream0(HttpURLConnection.java:1316)
at sun.net.www.protocol.http.HttpURLConnection.getOutputStream(HttpURLConnection.java:1291)
at org.apache.cxf.transport.http.URLConnectionHTTPConduit$URLConnectionWrappedOutputStream.setupWrappedStream(URLConnectionHTTPConduit.java:174)
at org.apache.cxf.transport.http.HTTPConduit$WrappedOutputStream.handleHeadersTrustCaching(HTTPConduit.java:1302)
at org.apache.cxf.transport.http.HTTPConduit$WrappedOutputStream.onFirstWrite(HTTPConduit.java:1258)
at org.apache.cxf.transport.http.URLConnectionHTTPConduit$URLConnectionWrappedOutputStream.onFirstWrite(URLConnectionHTTPConduit.java:201)
at org.apache.cxf.io.AbstractWrappedOutputStream.write(AbstractWrappedOutputStream.java:47)
at org.apache.cxf.io.AbstractThresholdOutputStream.unBuffer(AbstractThresholdOutputStream.java:89)
at org.apache.cxf.io.AbstractThresholdOutputStream.write(AbstractThresholdOutputStream.java:63)
at javax.activation.DataHandler.writeTo(DataHandler.java:309)
at org.apache.cxf.jaxrs.provider.MultipartProvider.writeTo(MultipartProvider.java:266)
at org.apache.cxf.jaxrs.utils.JAXRSUtils.writeMessageBody(JAXRSUtils.java:1363)
at org.apache.cxf.jaxrs.client.AbstractClient.writeBody(AbstractClient.java:455)
at org.apache.cxf.jaxrs.client.WebClient$BodyWriter.doWriteBody(WebClient.java:1215)
at org.apache.cxf.jaxrs.client.AbstractClient$AbstractBodyWriter.handleMessage(AbstractClient.java:1044)
at org.apache.cxf.phase.PhaseInterceptorChain.doIntercept(PhaseInterceptorChain.java:307)
at org.apache.cxf.jaxrs.client.AbstractClient.doRunInterceptorChain(AbstractClient.java:623)
at org.apache.cxf.jaxrs.client.WebClient.doChainedInvocation(WebClient.java:1084)
at org.apache.cxf.jaxrs.client.WebClient.doInvoke(WebClient.java:883)
at org.apache.cxf.jaxrs.client.WebClient.doInvoke(WebClient.java:854)
at org.apache.cxf.jaxrs.client.WebClient.invoke(WebClient.java:320)
at org.apache.cxf.jaxrs.client.WebClient.post(WebClient.java:329)
at org.apache.tika.parser.journal.GrobidRESTParser.parse(GrobidRESTParser.java:77)
at org.apache.tika.parser.journal.JournalParser.parse(JournalParser.java:60)
at org.apache.tika.parser.CompositeParser.parse(CompositeParser.java:280)
at org.apache.tika.parser.CompositeParser.parse(CompositeParser.java:280)
at org.apache.tika.parser.AutoDetectParser.parse(AutoDetectParser.java:120)
at org.voyanttools.trombone.input.extract.TikaExtractor$ExtractableTikaInputSource.getInputStream(TikaExtractor.java:137)
at org.voyanttools.trombone.storage.file.FileStoredDocumentSourceStorage.getStoredDocumentSource(FileStoredDocumentSourceStorage.java:115)
at org.voyanttools.trombone.input.extract.StoredDocumentSourceExtractor.getExtractedStoredDocumentSource(StoredDocumentSourceExtractor.java:145)
at org.voyanttools.trombone.input.extract.StoredDocumentSourceExtractor$CallableExtractor.call(StoredDocumentSourceExtractor.java:166)
at org.voyanttools.trombone.input.extract.StoredDocumentSourceExtractor$CallableExtractor.call(StoredDocumentSourceExtractor.java:1)
at java.util.concurrent.FutureTask.run(FutureTask.java:266)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
at java.lang.Thread.run(Thread.java:745)
2017-03-23 08:13:14.192:INFO:/:qtp1044036744-13: trombone: Parameters:|?accessIP: 127.0.0.1|?upload: /home/ucsbcollab/Applications/VoyantServer/data/tmp.voyant.uploads/tmp.voyant.uploads550188387377441…|?palette: default|?tool: corpus.CorpusCreator|?textarea-1014-inputEl: Type in one or more URLs on separate lines or paste in a full text.|I uploaded the jar files for pdfbox2.0.5 and it appears to be working now. That was indeed the issue. Thanks!
sgsinclair
commented
7 years ago Excellent, thanks for confirming, I'll do some cleaning of the jars before creating the next build.
When I upload a file running on a VM, I'm receiving an error:
I'm running this on a Ubuntu 16.04.1 VM running OpenJDK 1.8.0_121.