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shahab-sarmashghi / Skmer

Fast and accurate tool for estimating genomic distances between genome-skims
https://shahab-sarmashghi.github.io/Skmer/
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rep0 ValueError: Please check subsample directory and try again #32

Closed rlzhang1216 closed 2 weeks ago

rlzhang1216 commented 2 weeks ago

When I run "skmer correct-main dimtrx_main.txt -sub subsample", I get an error and prompt "rep0 ValueError: Please check subsample directory and try again." I tried to change the python version, but it still didn't work. Thanks.

noraracht commented 2 weeks ago

Thank you for reporting this. However, we need more information to debug. This error suggests that software simply can not find folder with subreplicate repositores such as rep0, rep1, etc. in a provided path. Please check you directory path and accessibility. In suggested workflow "skmer subsample" command should be run first so it creates subasample folder and this path should be given as an input to correction command. Thank you,

rlzhang1216 commented 2 weeks ago

Thank you for reporting this. However, we need more information to debug. This error suggests that software simply can not find folder with subreplicate repositores such as rep0, rep1, etc. in a provided path. Please check you directory path and accessibility. In suggested workflow "skmer subsample" command should be run first so it creates subasample folder and this path should be given as an input to correction command. Thank you,