shaistamadad GPLVM_Shaista issues - Githubissues

shaistamadad / GPLVM_Shaista

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An example loop for clustering metrics

#13 emdann opened 3 years ago
0
How to use scanpy layers

#12 emdann opened 3 years ago
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How to save the old dim reductions

#11 emdann opened 3 years ago
0
'GPLVM' object has no attribute 'X'

#10 shaistamadad closed 3 years ago
3
__init__() got an unexpected keyword argument 'X_init'

#9 shaistamadad closed 3 years ago
0
Update 04/11/2021

#8 emdann opened 3 years ago
0
generate plots of embeddings of pancreas and iPSC dataset with standard PCA+UMAP preprocessing pipeline from scanpy (which metadata covariates explain most of the variation found in these datasets? Does the embedding capture the pseudotime ordering estimated with RNA velocity analysis?)

#7 shaistamadad opened 3 years ago
2
CUDA out of memory for Pancreas Dataset

#6 shaistamadad closed 3 years ago
9
X_init not available in scvelo datasets

#5 shaistamadad closed 3 years ago
4
Missing txt file in data directory

#4 shaistamadad closed 3 years ago
0
Trouble writing model to file

#3 shaistamadad closed 3 years ago
6
Run GPLVM model on GPU instance: see instructions to setup a conda environment with required packages in README

#2 shaistamadad closed 3 years ago
9
Update 27/10/2021

#1 emdann opened 3 years ago
0