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shalinshah1993 / SBSCL

The Systems Biology Simulation Core Library (SBSCL) provides an efficient and exhaustive Java implementation of methods to interpret the content of models encoded in the Systems Biology Markup Language (SBML) and its numerical solution.
https://draeger-lab.github.io/SBSCL/
GNU Lesser General Public License v3.0
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glpksolver and lpsolver jars missing from repository #13

Closed matthiaskoenig closed 6 years ago

matthiaskoenig commented 6 years ago

You added the following 2 jars to the pom.xml, but they are not part of the repository.

    <dependency>
      <groupId>nmi</groupId>
      <artifactId>glpksolver</artifactId>
      <version>4.35</version>
      <scope>system</scope>
      <systemPath>${project.basedir}/lib/nmi/glpksolver/4.35/glpkSolver-4.35.jar</systemPath>
    </dependency>
    <dependency>
      <groupId>nmi</groupId>
      <artifactId>lpsolver</artifactId>
      <version>5.5.2.5</version>
      <scope>system</scope>
      <systemPath>${project.basedir}/lib/nmi/lpsolver/5.5.2.5/lpSolver-5.5.jar</systemPath>
matthiaskoenig commented 6 years ago

For running flux balance analysis simulations a LP solver is required. The respective jars have to be made available. The jars can be downloaded from scpsolver.org.

Download the GLPK Solver Pack GLPKSolverPack.jar (please note the GPL licensing terms) and LPSOLVE Solver Pack LPSOLVESolverPack.jar (please note the LGPL licensing terms) from http://scpsolver.org/ and add in the library folder according to the pom.xml.