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shalinshah1993 / SBSCL

The Systems Biology Simulation Core Library (SBSCL) provides an efficient and exhaustive Java implementation of methods to interpret the content of models encoded in the Systems Biology Markup Language (SBML) and its numerical solution.
https://draeger-lab.github.io/SBSCL/
GNU Lesser General Public License v3.0
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Run FBA tests on all BiGG models #28

Closed matthiaskoenig closed 6 years ago

matthiaskoenig commented 6 years ago

FBA simulations with all BiGG models should be performed and compared against reference solutions from cobrapy. BiGG models are not part of the repository, but must be downloaded for testing in CI or locally. Access is via environment variable.

matthiaskoenig commented 6 years ago

Most of this is implemented in https://github.com/shalinshah1993/SBSCL/commit/cefc069f6000ffe7ff252a6049413a5f422d33e2

This issue depends on #24, i.e. only if FBA is working than it can be run on all BiGG models.

shalinshah1993 commented 6 years ago

This issue was moved to draeger-lab/SBSCL#4