FBA gives incorrect objective_value 0 for bigg models iMM1415 & iRC1080

shalinshah1993 / SBSCL

The Systems Biology Simulation Core Library (SBSCL) provides an efficient and exhaustive Java implementation of methods to interpret the content of models encoded in the Systems Biology Markup Language (SBML) and its numerical solution.

https://draeger-lab.github.io/SBSCL/

GNU Lesser General Public License v3.0

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FBA gives incorrect objective_value 0 for bigg models iMM1415 & iRC1080 #59

Closed matthiaskoenig closed 6 years ago

matthiaskoenig commented 6 years ago

see https://github.com/draeger-lab/SBSCL/issues/1

When comparing the results of simple FBA simulations of cobrapy with SBSCL the following two BiGG models give different results:

objective_value_cobrapy     mid     objective_value_sbscl   identical
1.3634279056507832  iMM1415     0.0     False
6.156851475936173   iRC1080     0.0     False

shalinshah1993 commented 6 years ago

Discussion can be done here - https://github.com/draeger-lab/SBSCL/issues/1