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shandley / hecatomb

hecatomb is a virome analysis pipeline for analysis of Illumina sequence data
MIT License
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hecatomb.config.yaml #108

Closed wuhuiyun07 closed 3 months ago

wuhuiyun07 commented 3 months ago

In my hecatomb.config.yaml the path is conda_prefix: /usr/local/lib/python3.12/site-packages/hecatomb/snakemake/conda. How can I modify this path and how can I define it?

Error message: Traceback (most recent call last): File "/usr/local/lib/python3.12/site-packages/snakemake/init.py", line 792, in snakemake success = workflow.execute( ^^^^^^^^^^^^^^^^^ File "/usr/local/lib/python3.12/site-packages/snakemake/workflow.py", line 842, in execute self._persistence = Persistence( ^^^^^^^^^^^^ File "/usr/local/lib/python3.12/site-packages/snakemake/persistence.py", line 111, in init os.makedirs(d, exist_ok=True) File "", line 225, in makedirs OSError: [Errno 30] Read-only file system: '/usr/local/lib/python3.12/site-packages/hecatomb/snakemake/conda'

wuhuiyun07 commented 3 months ago

Issue solved. I download a docker image and it was not working. I followed the conda installation and it worked.