Hecatomb not working ( secondary aa taxonomy)

shandley / hecatomb

hecatomb is a virome analysis pipeline for analysis of Illumina sequence data

MIT License

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Hecatomb not working ( secondary aa taxonomy) #110

Open RarltyOne opened 4 months ago

RarltyOne commented 4 months ago

WhatsApp Image 2024-05-29 at 13 38 01 there may be a problem with the profile, that is, I did not create it. I downloaded the conda, installed Hecatomb, (and databases) and after using the run reads command (specified the directory) and after the error pops up. Made on Linux

beardymcjohnface commented 3 months ago

Hi, This is not enough information to troubleshoot. If it has run through to the secondary AA search then the profile is generally working. Are you using a profile for a workflow manager such as slurm? This stage can fail if it runs out of memory. If so, you should check the scheduler logs. In the example profile the scheduler logs are in logs/ whereas the program logs are in hecatomb.out/logs/.

RarltyOne commented 3 months ago

Hi. nop im not use. but i install profile and run test and again have a error. And slurm profile its correct. i install standart profile (in instruction) can i send logs?

RarltyOne commented 3 months ago

and logs

maybe problem with my processor Intel® Xeon(R) CPU E5-2609 v4 @ 1.70GHz × 16

or profile i install default profile (in the hecatomb install instruction)