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shandley / hecatomb

hecatomb is a virome analysis pipeline for analysis of Illumina sequence data
MIT License
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Error executing PRIMARY_NT_reformat #60

Closed shandley closed 2 years ago

shandley commented 2 years ago

Cluster error:

/bin/bash: line 10: 18485 Illegal instruction (core dumped) mmseqs filterdb hecatomb_out/RESULTS/MMSEQS_NT_PRIMARY/results/result hecatomb_out/RESULTS/MMSEQS_NT_PRIMARY/results/firsthit --extract-lines 1

Log file error report (same as above):

/bin/bash: line 10: 18485 Illegal instruction (core dumped) mmseqs filterdb hecatomb_out/RESULTS/MMSEQS_NT_PRIMARY/results/result hecatomb_out/RESULTS/MMSEQS_NT_PRIMARY/results/firsthit --extract-lines 1

beardymcjohnface commented 2 years ago

I forgot to mention this in today's meeting; I do occasionally get this sort of error and I don't know how to troubleshoot these MMSeqs issues. Sometimes rerunning works, sometimes deleting the query DBs and rerunning works. I'm hoping newer versions of MMSeqs have helped with stability.