This PR includes the edits I've made that replace the bbtools pre-processing rules with a single fastP pre-processing rule. This also includes the addition of a command line option to use single end rather than paired end reads. Mike tested the fastp update previously and found that it made no noticeable difference to the output, which is good.
This PR includes the edits I've made that replace the bbtools pre-processing rules with a single fastP pre-processing rule. This also includes the addition of a command line option to use single end rather than paired end reads. Mike tested the fastp update previously and found that it made no noticeable difference to the output, which is good.