Add in round A/B seq functionality

shandley / hecatomb

hecatomb is a virome analysis pipeline for analysis of Illumina sequence data

MIT License

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Add in round A/B seq functionality #71

Closed SarahBeecroft closed 2 years ago

SarahBeecroft commented 2 years ago

Add a new rule for pre-processing of round A/B seq data that includes 5' primer trimming in addition to fastp preprocessing step. Assumes paired end reads. Also added in some tweaks incl. info on mamba install and Canu settings in config file (from Mike).