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shane-c-lawson / breseq

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Crash on failing to fit negative binomial distribution #12

Closed GoogleCodeExporter closed 8 years ago

GoogleCodeExporter commented 8 years ago 
R --vanilla < coverage_distribution.r > ./9382.r.log
distribution_file=07.csv plot_file=GQ141978.unique_coverage.pdf
deletion_propagation_pr_cutoff=0.000455185421132389
junction_coverage_pr_cutoff=8.28775070445881e-05
junction_accept_pr_cutoff=0.01
junction_keep_pr_cutoff=9.10370842264778e-05 junction_max_score=200
Error in nlm(f_nb, c(m, 1)) : non-finite value supplied by 'nlm'
In addition: There were 50 or more warnings (use warnings() to see the first 50)
Execution halted

Original issue reported on code.google.com by jeffrey....@gmail.com on 27 Jul 2011 at 1:38

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GoogleCodeExporter commented 8 years ago 
Resolved, but not thoroughly tested yet. References with no coverage also 
handled.

Original comment by jeffrey....@gmail.com on 14 Sep 2011 at 2:57