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shane-c-lawson / breseq

Automatically exported from code.google.com/p/breseq
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MOB mutation prediction breaks under certain circumstances #26

Closed GoogleCodeExporter closed 8 years ago

GoogleCodeExporter commented 8 years ago 
Using breseq test data, run REL606.fragment.gbk against all 3 .fastq files.

The program will crash because the mutation predictor for MOBs is sending 
cAnnotatedSequence::get_sequence_1() starts that are larger than ends.

This could be an issue with _strand values being wrong or incorrectly checked 
in MutationPredictor::predictor().

Original issue reported on code.google.com by MDStr...@gmail.com on 29 Oct 2011 at 1:47

GoogleCodeExporter commented 8 years ago 
Fixed internals a while back. No longer an issue.

Original comment by jeffrey....@gmail.com on 5 Feb 2012 at 8:18