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shane-c-lawson / breseq

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SMALT does not align indels #3

Closed GoogleCodeExporter closed 8 years ago

GoogleCodeExporter commented 8 years ago 
SMALT alignments (unlike SSAHA2 alignments) need to be corrected for the 
location of gaps in homopolymer indels by porting old Perl code for doing this. 
Add at alignment resolution step.

Original issue reported on code.google.com by jeffrey....@gmail.com on 24 Jun 2011 at 2:12

GoogleCodeExporter commented 8 years ago 
SSAHA2 for the foreseeable future.

Original comment by jeffrey....@gmail.com on 8 Aug 2011 at 9:14