shane-c-lawson / breseq

Automatically exported from code.google.com/p/breseq
Other
0 stars 0 forks source link

Genome Diff entry errors #37

Closed GoogleCodeExporter closed 8 years ago

GoogleCodeExporter commented 8 years ago
GenomeDiff format is very unforgiving to certain very small user errors in 
entry.

For example: If you enter a space in a SNP replacement "A " then it generates a 
mutated file with a space in it that SAMtools doesn't like on APPLY.

Can we clean leading and trailing whitespace from genome diff's on read?

Original issue reported on code.google.com by jeffrey....@gmail.com on 25 Feb 2012 at 4:20

GoogleCodeExporter commented 8 years ago
I am now working on this.

Original comment by aaronr...@gmail.com on 9 May 2012 at 8:47

GoogleCodeExporter commented 8 years ago
This issue was closed by revision 7065be54ce58.

Original comment by Geoffrey...@gmail.com on 10 May 2012 at 7:55