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shane-c-lawson / breseq

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/usr/local/share/breseq/coverage_distribution.r: No such file or directory #70

Closed GoogleCodeExporter closed 8 years ago

GoogleCodeExporter commented 8 years ago 
What steps will reproduce the problem?
1.Install Breseq in non-default directory by using ./configure --prefix=newdir/
2.Run Breseq
3.

What is the expected output? What do you see instead?
I see complaint: 
sh: /usr/local/share/breseq/coverage_distribution.r: No such file or directory
!!!!!!!!!!!!!!!!!!!!!!!> FATAL ERROR <!!!!!!!!!!!!!!!!!!!!!!!

What version of the product are you using? On what operating system?
breseq-0.23  

Please provide any additional information below.

Original issue reported on code.google.com by kevinc...@gmail.com on 14 Aug 2013 at 3:44

GoogleCodeExporter commented 8 years ago 
This seems to be related to not copying a file to newdir/share/* during install.

Can you provide me with:

1) The operating system
2) The full output when you do 'make install'?

Thanks!

Original comment by jeffrey....@gmail.com on 14 Aug 2013 at 12:39

GoogleCodeExporter commented 8 years ago 
I installed it again using configure
--prefix=/disk/rdisk08/jiapchen/bin/breseq-0.23
--datarootdir=/disk/rdisk08/jiapchen/bin/breseq-0.23/share/. This time it
works. Just add "
--datarootdir=/disk/rdisk08/jiapchen/bin/breseq-0.23/share/"

Original comment by kevinc...@gmail.com on 15 Aug 2013 at 7:46

GoogleCodeExporter commented 8 years ago 
Thanks.  If you could give me one more piece of information, I'll see if I can 
make the --prefix only install work like it should on your system in future 
versions. 

Do you know where it is trying to copy the *.r files when you only supply 
--prefix? I'm guessing its somewhere other than /share.

Original comment by jeffrey....@gmail.com on 15 Aug 2013 at 1:34

GoogleCodeExporter commented 8 years ago 
I don't know. The solution was from our cluster administrator.
Thank you all the same.

Original comment by kevinc...@gmail.com on 15 Aug 2013 at 1:38

GoogleCodeExporter commented 8 years ago 
Checked code and all paths seem to be set as recommended by autoconf for 
portability. Will need more details to resolve this issue so that --prefix is 
sufficient, if it crops up for other people.

Original comment by jeffrey....@gmail.com on 16 Aug 2013 at 2:33