shaunpwilkinson aphid issues - Githubissues

shaunpwilkinson / aphid

Analysis with Profile Hidden Markov Models

21 stars 4 forks source link

issues

Newest

Newest Most commented Recently updated Oldest Least commented Least recently updated

train.PHMM() fails with method "BaumWelch", but works with "Viterbi"

#12 leonjessen opened 2 weeks ago
2
nhmmer-like homology search

#11 pedrosenna opened 8 months ago
0
Using multiple cores for `train()`

#10 rahilvora9 opened 2 years ago
0
aphid crashes on sequences of length 1

#9 leonjessen opened 2 years ago
0
Vectorised version of Viterbi.PHMM()?

#8 leonjessen opened 3 years ago
1
Segmentation fault when setting pseudocounts = "none" in derivePHMM

#7 taherimo opened 4 years ago
1
Added subsetPHMM function

#6 CNuge opened 4 years ago
1
Proposed addition: Sub-setting profile hidden Markov models

#5 CNuge opened 4 years ago
2
Example on running with multiple cores

#4 leonjessen opened 4 years ago
2
Posterior method not currently available for profile HMMs

#3 leonjessen opened 5 years ago
2
Training with BaumWelch algorithm

#2 maforinw opened 5 years ago
1
Initializing HMM parameters

#1 maforinw closed 5 years ago
2