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shawnlaffan / biodiverse

A tool for the spatial analysis of diversity
http://shawnlaffan.github.io/biodiverse/
GNU General Public License v3.0
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Cluster matrices - add to the basedata object and plot them using the GUI #199

Closed GoogleCodeExporter closed 9 years ago

GoogleCodeExporter commented 9 years ago 
Run a cluster analysis.  You cannot see the matrices used in the clustering 
unless you export them via the cluster export methods and then re-import.  This 
is clunky as one cannot visualise the matrix unless one transposes the BaseData 
and uses the View Labels tab.  Even then, it is not easy to see the spatial 
arrangement of the matrix values as the View Labels tab is not set up to do so. 

When plotting the matrix, the user should be able to click on a cell and see 
the remainder of the cells coloured by the matrix values for the respective 
pairs (selected cell vs each other cell).  This allows an interactive 
exploration of spatial patterns of turnover and is potentially extremely 
powerful when used in conjunction with analyses such as GDM and species 
turnover correlograms.

Original issue reported on code.google.com by shawnlaffan on 9 Jan 2011 at 10:46

GoogleCodeExporter commented 9 years ago 
most changes are done - see rev 1929 of the still-not-on-google-code svn repo.

The next step is to add an option to the clustering to just create the matrices 
and skip the clustering if the user so desires.

Original comment by shawnlaffan on 9 Jan 2011 at 10:51

GoogleCodeExporter commented 9 years ago 
Rest done in rev 1932

Original comment by shawnlaffan on 10 Jan 2011 at 3:48

GoogleCodeExporter commented 9 years ago 
Re-opening.  Matrix tabs don't always e-open after they are closed.

Original comment by shawnlaffan on 25 Jan 2011 at 10:57

GoogleCodeExporter commented 9 years ago 
Re-ordered inheritance to get the correct remove method.

Original comment by shawnlaffan on 25 Jan 2011 at 11:24

GoogleCodeExporter commented 9 years ago 
This issue was updated by revision r788.

Don't clone the matrices if not being clustered.

Original comment by shawnlaffan on 3 Nov 2011 at 7:06

GoogleCodeExporter commented 9 years ago 
This issue was updated by revision r790.

Provide default array for param ORIG_MATRICES

Original comment by shawnlaffan on 3 Nov 2011 at 9:27