Questions about R version in this research

shbrief / GenomicSuperSignature

Interpretation of RNAseq experiments through robust, efficient comparison to public databases

https://shbrief.github.io/GenomicSuperSignature/

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Questions about R version in this research #21

Closed HelloWorldLTY closed 2 years ago

HelloWorldLTY commented 2 years ago

Hi, I tried to run the codes related to RAV model building and met errors related to package installation. My R version is 4.1.3. For the GF package, I cannot install it based on my R. Therefore, could you please share the version of your software? Thanks a lot.

shbrief commented 2 years ago

@HelloWorldLTY I'm using R 4.2.1. Btw, which script are you running? I can take a look at it as well. Thanks!

HelloWorldLTY commented 2 years ago

It happens in 01_import.R. I need to install Genomic Feature. Thanks a lot.

shbrief commented 2 years ago

Great! The codes under my model_building repository are mostly for in-house use, but if you have any questions, let me know. FYI, I plan to implement the RAVmodel building process in the cloud-based genomics platform in the future - probably not soon, but once it happens, will be posted. ;) Thanks.