A tool to quantify sub-genomic RNA (sgRNA) expression in SARS-CoV-2 artic network amplicon nanopore sequencing data.
GNU General Public License v3.0
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Use spliced alignments and junction reads to quantify sgRNA #3
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mattdmem opened 4 years ago
This is SIGNIFICANTLY faster, 9000it/s - up from 100ish. Alignment step is probably a couple of minutes longer.