Uncouple mapping threading from periscope threading

sheffield-bioinformatics-core / periscope

A tool to quantify sub-genomic RNA (sgRNA) expression in SARS-CoV-2 artic network amplicon nanopore sequencing data.

GNU General Public License v3.0

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Closed mbdabrowska1 closed 3 years ago

mbdabrowska1 commented 3 years ago

Currently --threads argument is used for setting threading for both the mapping algorithm as well as the periscope multiprocessing.

mbdabrowska1 commented 3 years ago

[x] Added mapping_threads argument that defaults to processing threads if not provided with a value