Why is the artic package version pinned at 1.1.1?

[wm75]

... and why are you not taking it from bioconda?

Just thinking about how we can offer your tool in Galaxy :)

[mattdmem]

Hello!

Errr - no reason for not taking from bioconda. The only reason it's used is finding which amplicon is which I think so it just uses a small part of the code to do this - I think in align_trim.py or something. Will check further and get back to you.

Thanks for your interest in including in galaxy - that would be awesome!

Matt

[kjshan]

I dont have any error when I run this command below "conda env create -f environment.yml conda activate periscope pip install ."

However, when I run periscope, it say "ModuleNotFoundError: No module named 'artic'" and I try install artic package by "conda install -c bioconda artic".

It reported this below: "Output in format: Requested package -> Available versionsThe following specifications were found to be incompatible with your system:

• feature:/linux-64::__glibc==2.17=0
• python=3.9 -> libgcc-ng[version='>=11.2.0'] -> __glibc[version='>=2.17']

Your installed version is: 2.17"

Could you guys be friendly to help me?