shendurelab / LACHESIS

The LACHESIS software, as described in Nature Biotechnology (http://dx.doi.org/10.1038/nbt.2727)
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Gaps #29

Closed ivyhzau closed 7 years ago

ivyhzau commented 7 years ago

Hi, LACHESIS is a so good software to do genome assembling. I have run it with no reference genome. In the group file, the gap_size_after_contig colum correspond to ".". When I converted the fasta file to agp file, it seems that the gap is 1000bp. Is my understanding rigtht or wrong? Looking forward for your help