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shendurelab / LACHESIS

The LACHESIS software, as described in Nature Biotechnology (http://dx.doi.org/10.1038/nbt.2727)
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Lachesis: Lachesis.cc:158: void LachesisOrdering(const RunParams&): Assertion `(int) clusters.size() >= run_params._cluster_N' failed. #42

Open rahmanYI opened 6 years ago

rahmanYI commented 6 years ago

Lachesis: Lachesis.cc:158: void LachesisOrdering(const RunParams&): Assertion `(int) clusters.size() >= run_params._cluster_N' failed.

MRCmashroom commented 6 years ago

hi YI Are you salving this problam?

bhagya-ct commented 6 years ago

Hello,

ran into the same problem, any solution?

burnsro commented 6 years ago

It isn't finding 23 "chromosomes"/clusters of contigs, in your HiC data which is the default setting in the ini file. If you have an idea of the chromosome number you expect, change that from the default number of 23 in the ini file