Open milkcookie opened 6 years ago
Making all in src/include/gtools make[1]: Entering directory /public1/home/stu_yanhansong/software/Hi-C/LACHESIS-master/src/include/gtools' ar crv libJgtools.a N50.o ChromInterval.o HumanGenome.o CopyNumberProfile.o FileParsers.o SAMStepper.o; mv libJgtools.a .. a - N50.o a - ChromInterval.o a - HumanGenome.o a - CopyNumberProfile.o a - FileParsers.o a - SAMStepper.o make[1]: Leaving directory/public1/home/stu_yanhansong/software/Hi-C/LACHESIS-master/src/include/gtools' Making all in src/include/markov make[1]: Entering directory /public1/home/stu_yanhansong/software/Hi-C/LACHESIS-master/src/include/markov' ar crv libJmarkov.a SymbolSet.o WDAG.o MarkovModel.o MarkovChain.o HMM.o; mv libJmarkov.a .. a - SymbolSet.o a - WDAG.o a - MarkovModel.o a - MarkovChain.o a - HMM.o make[1]: Leaving directory/public1/home/stu_yanhansong/software/Hi-C/LACHESIS-master/src/include/markov' Making all in src/include make[1]: Entering directory /public1/home/stu_yanhansong/software/Hi-C/LACHESIS-master/src/include' make[1]: Nothing to be done forall'. make[1]: Leaving directory /public1/home/stu_yanhansong/software/Hi-C/LACHESIS-master/src/include' Making all in src make[1]: Entering directory/public1/home/stu_yanhansong/software/Hi-C/LACHESIS-master/src' make all-am make[2]: Entering directory /public1/home/stu_yanhansong/software/Hi-C/LACHESIS-master/src' /bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -static -lz -lpthread -Linclude -lJtime -lJgtools -lJmarkov -L/public1/home/stu_yanhanso libtool: link: g++ -g -O2 -Wl,-R -Wl,/public1/home/stu_yanhansong/software/boost_1_61_0//lib -Wl,-R -Wl,/public1/home/stu_yanhansong/software/boo make[2]: Leaving directory/public1/home/stu_yanhansong/software/Hi-C/LACHESIS-master/src' make[1]: Leaving directory /public1/home/stu_yanhansong/software/Hi-C/LACHESIS-master/src' Lachesis-ChromLinkMatrix.o: In functionAssertFilesExist(std::vector<std::string, std::allocator > const&)': /public1/home/stu_yanhansong/software/boost_1_61_0//include/boost/filesystem/operations.hpp:455: undefined reference to boost::filesystem::detai l::status(boost::filesystem::path const&, boost::system::error_code*)'Lachesis-ChromLinkMatrix.o: In functionLoadNonDeNovoCLMsFromSAM(std::string const&, std::vector<ChromLinkMatrix, std::allocator<ChromLinkMatri x> >)':/public1/home/stu_yanhansong/software/boost_1_61_0//include/boost/filesystem/operations.hpp:455: undefined reference to boost::filesystem::detai l::status(boost::filesystem::path const&, boost::system::error_code*)'Lachesis-ChromLinkMatrix.o: In functionChromLinkMatrix::ReadFile(std::string const&)': /public1/home/stu_yanhansong/software/boost_1_61_0//include/boost/filesystem/operations.hpp:455: undefined reference to boost::filesystem::detai l::status(boost::filesystem::path const&, boost::system::error_code*)'Lachesis-GenomeLinkMatrix.o: In functionGenomeLinkMatrix::LoadFromSAM(std::string const&, std::vector<int, std::allocator > const&)': /public1/home/stu_yanhansong/software/boost_1_61_0//include/boost/filesystem/operations.hpp:455: undefined reference to boost::filesystem::detai l::status(boost::filesystem::path const&, boost::system::error_code*)'Lachesis-GenomeLinkMatrix.o: In functionGenomeLinkMatrix::LoadFromSAMDeNovo(std::vector<std::string, std::allocator > const&)': /public1/home/stu_yanhansong/software/boost_1_61_0//include/boost/filesystem/operations.hpp:455: undefined reference to boost::filesystem::detai l::status(boost::filesystem::path const&, boost::system::error_code*)'Lachesis-GenomeLinkMatrix.o:/public1/home/stu_yanhansong/software/boost_1_61_0//include/boost/filesystem/operations.hpp:455: more undefined refer ences toboost::filesystem::detail::status(boost::filesystem::path const&, boost::system::error_code*)' followcollect2: error: ld returned 1 exit status make[2]: [Lachesis] Error 1 make[1]: [all] Error 2 make: *** [all-recursive] Error 1
/public1/home/stu_yanhansong/software/Hi-C/LACHESIS-master/src/include/gtools' ar crv libJgtools.a N50.o ChromInterval.o HumanGenome.o CopyNumberProfile.o FileParsers.o SAMStepper.o; mv libJgtools.a .. a - N50.o a - ChromInterval.o a - HumanGenome.o a - CopyNumberProfile.o a - FileParsers.o a - SAMStepper.o make[1]: Leaving directory
/public1/home/stu_yanhansong/software/Hi-C/LACHESIS-master/src/include/markov' ar crv libJmarkov.a SymbolSet.o WDAG.o MarkovModel.o MarkovChain.o HMM.o; mv libJmarkov.a .. a - SymbolSet.o a - WDAG.o a - MarkovModel.o a - MarkovChain.o a - HMM.o make[1]: Leaving directory
/public1/home/stu_yanhansong/software/Hi-C/LACHESIS-master/src/include' make[1]: Nothing to be done for
/public1/home/stu_yanhansong/software/Hi-C/LACHESIS-master/src/include' Making all in src make[1]: Entering directory
/public1/home/stu_yanhansong/software/Hi-C/LACHESIS-master/src' /bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -static -lz -lpthread -Linclude -lJtime -lJgtools -lJmarkov -L/public1/home/stu_yanhanso libtool: link: g++ -g -O2 -Wl,-R -Wl,/public1/home/stu_yanhansong/software/boost_1_61_0//lib -Wl,-R -Wl,/public1/home/stu_yanhansong/software/boo make[2]: Leaving directory
/public1/home/stu_yanhansong/software/Hi-C/LACHESIS-master/src' Lachesis-ChromLinkMatrix.o: In function
boost::filesystem::detai l::status(boost::filesystem::path const&, boost::system::error_code*)'Lachesis-ChromLinkMatrix.o: In function
boost::filesystem::detai l::status(boost::filesystem::path const&, boost::system::error_code*)'Lachesis-GenomeLinkMatrix.o: In function
boost::filesystem::detai l::status(boost::filesystem::path const&, boost::system::error_code*)'Lachesis-GenomeLinkMatrix.o:/public1/home/stu_yanhansong/software/boost_1_61_0//include/boost/filesystem/operations.hpp:455: more undefined refer ences to
Making all in src/include/gtools make[1]: Entering directory > const&)':
/public1/home/stu_yanhansong/software/boost_1_61_0//include/boost/filesystem/operations.hpp:455: undefined reference to > const&)':
/public1/home/stu_yanhansong/software/boost_1_61_0//include/boost/filesystem/operations.hpp:455: undefined reference to > const&)':
/public1/home/stu_yanhansong/software/boost_1_61_0//include/boost/filesystem/operations.hpp:455: undefined reference to
/public1/home/stu_yanhansong/software/Hi-C/LACHESIS-master/src/include/gtools' ar crv libJgtools.a N50.o ChromInterval.o HumanGenome.o CopyNumberProfile.o FileParsers.o SAMStepper.o; mv libJgtools.a .. a - N50.o a - ChromInterval.o a - HumanGenome.o a - CopyNumberProfile.o a - FileParsers.o a - SAMStepper.o make[1]: Leaving directory
/public1/home/stu_yanhansong/software/Hi-C/LACHESIS-master/src/include/gtools' Making all in src/include/markov make[1]: Entering directory/public1/home/stu_yanhansong/software/Hi-C/LACHESIS-master/src/include/markov' ar crv libJmarkov.a SymbolSet.o WDAG.o MarkovModel.o MarkovChain.o HMM.o; mv libJmarkov.a .. a - SymbolSet.o a - WDAG.o a - MarkovModel.o a - MarkovChain.o a - HMM.o make[1]: Leaving directory
/public1/home/stu_yanhansong/software/Hi-C/LACHESIS-master/src/include/markov' Making all in src/include make[1]: Entering directory/public1/home/stu_yanhansong/software/Hi-C/LACHESIS-master/src/include' make[1]: Nothing to be done for
all'. make[1]: Leaving directory/public1/home/stu_yanhansong/software/Hi-C/LACHESIS-master/src/include' Making all in src make[1]: Entering directory
/public1/home/stu_yanhansong/software/Hi-C/LACHESIS-master/src' make all-am make[2]: Entering directory/public1/home/stu_yanhansong/software/Hi-C/LACHESIS-master/src' /bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -static -lz -lpthread -Linclude -lJtime -lJgtools -lJmarkov -L/public1/home/stu_yanhanso libtool: link: g++ -g -O2 -Wl,-R -Wl,/public1/home/stu_yanhansong/software/boost_1_61_0//lib -Wl,-R -Wl,/public1/home/stu_yanhansong/software/boo make[2]: Leaving directory
/public1/home/stu_yanhansong/software/Hi-C/LACHESIS-master/src' make[1]: Leaving directory/public1/home/stu_yanhansong/software/Hi-C/LACHESIS-master/src' Lachesis-ChromLinkMatrix.o: In function
AssertFilesExist(std::vector<std::string, std::allocatorboost::filesystem::detai l::status(boost::filesystem::path const&, boost::system::error_code*)'Lachesis-ChromLinkMatrix.o: In function
LoadNonDeNovoCLMsFromSAM(std::string const&, std::vector<ChromLinkMatrix, std::allocator<ChromLinkMatri x> >)':/public1/home/stu_yanhansong/software/boost_1_61_0//include/boost/filesystem/operations.hpp:455: undefined reference toboost::filesystem::detai l::status(boost::filesystem::path const&, boost::system::error_code*)'Lachesis-ChromLinkMatrix.o: In function
ChromLinkMatrix::ReadFile(std::string const&)': /public1/home/stu_yanhansong/software/boost_1_61_0//include/boost/filesystem/operations.hpp:455: undefined reference toboost::filesystem::detai l::status(boost::filesystem::path const&, boost::system::error_code*)'Lachesis-GenomeLinkMatrix.o: In function
GenomeLinkMatrix::LoadFromSAM(std::string const&, std::vector<int, std::allocatorboost::filesystem::detai l::status(boost::filesystem::path const&, boost::system::error_code*)'Lachesis-GenomeLinkMatrix.o: In function
GenomeLinkMatrix::LoadFromSAMDeNovo(std::vector<std::string, std::allocatorboost::filesystem::detai l::status(boost::filesystem::path const&, boost::system::error_code*)'Lachesis-GenomeLinkMatrix.o:/public1/home/stu_yanhansong/software/boost_1_61_0//include/boost/filesystem/operations.hpp:455: more undefined refer ences to
boost::filesystem::detail::status(boost::filesystem::path const&, boost::system::error_code*)' followcollect2: error: ld returned 1 exit status make[2]: [Lachesis] Error 1 make[1]: [all] Error 2 make: *** [all-recursive] Error 1