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shendurelab / MIPGEN

One stop MIP design and analysis
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Failure Flag 1 #34

Closed ghost closed 1 year ago

ghost commented 6 years ago

Hi, some of the MIPs that I designed show a failure flag. According to the readme it should consist of 3 bits. I just get "1". Does this then mean non-uniqueness, SNP problem or tandem repeat? All the best KP

augustboyle commented 6 years ago

Hello,

I think that could be a sign that the code is not running properly on your targets. Does this happen when you run the example bed file? Also, are you viewing this in a text editor? Sometimes I would save/open something as an Excel file and the leading zeros would be lost. In general I suspect that seeing a 1 suggests ‘001.’

Evan

On July 23, 2018 at 1:53:45 PM, Karlimero (notifications@github.com) wrote:

Hi, some of the MIPs that I designed show a failure flag. According to the readme it should consist of 3 bits. I just get "1". Does this then mean non-uniqueness, SNP problem or tandem repeat? All the best KP

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ghost commented 6 years ago

You are completely right! Thanks a lot for this.