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generate_ucsc_track IndexError: list index out of range #40

Closed LorettaM closed 1 month ago

LorettaM commented 5 years ago

Hi,

I am new to this but I think I have successfully recovered mips using the following command: ../mipgen -regions_to_scan ../db.loss.bed -project_name CTCFLostInCRC -min_capture_size 120 -max_capture_size 250 -bwa_genome_index ../hg38.fa

I had indexed the hg38.fa using bwa prior to running the command above. After which all .sai, .fq and the _allsequences_mips.txt file were deleted. Now I am trying to run the UCSC track generator as follows:

python ../generate_ucsc_track.py ../CTCFLostInCRC.picked_mips.txt CTCF_Lost_In_CRC_Mips and I get the following error:

Traceback (most recent call last): File "/Users/lollie/Programs/shendurelab-MIPGEN-f953b0b/tools/generate_ucsctrack.py", line 39, in name = values[19] + "%.3f" %(float(values[1]))

Help please

augustboyle commented 5 years ago

Hi Loretta,

Have you looked at the picked MIPs file? I would be happy to look at it as well. It seems that the output may not have been generated properly.

Evan

On September 9, 2019 at 11:38:00 PM, LorettaM (notifications@github.com) wrote:

Hi,

I am new to this but I think I have successfully recovered mips using the following command: ../mipgen -regions_to_scan ../db.loss.bed -project_name CTCFLostInCRC -min_capture_size 120 -max_capture_size 250 -bwa_genome_index ../hg38.fa

I had indexed the hg38.fa using bwa prior to running the command above. After which all .sai, .fq and the _allsequences_mips.txt file were deleted. Now I am trying to run the UCSC track generator as follows:

python ../generate_ucsc_track.py ../CTCFLostInCRC.picked_mips.txt CTCF_Lost_In_CRC_Mips and I get the following error:

Traceback (most recent call last): File "/Users/lollie/Programs/shendurelab-MIPGEN-f953b0b/tools/generate_ucsctrack.py", line 39, in name = values[19] + "%.3f" %(float(values[1]))

Help please

— You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub https://github.com/shendurelab/MIPGEN/issues/40?email_source=notifications&email_token=ABOTLJ5AX3WQK2PWO2PCX7TQI46EPA5CNFSM4IVDSBRKYY3PNVWWK3TUL52HS4DFUVEXG43VMWVGG33NNVSW45C7NFSM4HKLMHFA, or mute the thread https://github.com/notifications/unsubscribe-auth/ABOTLJ7ABSDNUL6T34UAQHDQI46EPANCNFSM4IVDSBRA .

LorettaM commented 5 years ago

Hi Evan,

Thank you for getting back to me. Heres the picked MIPS file. 5 regions failed in the MIP discovery.

Best, L

On Tue, 10 Sep 2019 at 19:42, augustboyle notifications@github.com wrote:

Hi Loretta,

Have you looked at the picked MIPs file? I would be happy to look at it as well. It seems that the output may not have been generated properly.

Evan

On September 9, 2019 at 11:38:00 PM, LorettaM (notifications@github.com) wrote:

Hi,

I am new to this but I think I have successfully recovered mips using the following command: ../mipgen -regions_to_scan ../db.loss.bed -project_name CTCFLostInCRC -min_capture_size 120 -max_capture_size 250 -bwa_genome_index ../hg38.fa

I had indexed the hg38.fa using bwa prior to running the command above. After which all .sai, .fq and the _allsequences_mips.txt file were deleted. Now I am trying to run the UCSC track generator as follows:

python ../generate_ucsc_track.py ../CTCFLostInCRC.picked_mips.txt CTCF_Lost_In_CRC_Mips and I get the following error:

Traceback (most recent call last): File

"/Users/lollie/Programs/shendurelab-MIPGEN-f953b0b/tools/generate_ucsctrack.py", line 39, in name = values[19] + "%.3f" %(float(values[1]))

Help please

— You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub < https://github.com/shendurelab/MIPGEN/issues/40?email_source=notifications&email_token=ABOTLJ5AX3WQK2PWO2PCX7TQI46EPA5CNFSM4IVDSBRKYY3PNVWWK3TUL52HS4DFUVEXG43VMWVGG33NNVSW45C7NFSM4HKLMHFA

, or mute the thread < https://github.com/notifications/unsubscribe-auth/ABOTLJ7ABSDNUL6T34UAQHDQI46EPANCNFSM4IVDSBRA

.

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--

Loretta Magagula PhD Candidate Division of Chemical Systems & Synthetic Biology Institute for Infectious Disease & Molecular Medicine (IDM) Faculty of Health Sciences, Department of Integrative Biomedical Sciences, University of Cape Town Wernher & Beit Building North, Room N2.03, Anzio Road, Observatory, 7925, Cape Town South Africa Tel: +27 (0) 21 650-1638 <+27%2021%20650%201638> E-mail: loretta@mhlangalab.org Internet: www.mhlangalab.org http://www.idm.uct.ac.za/

mip_key logistic_score chr ext_probe_start ext_probe_stop ext_probe_copy ext_probe_sequence lig_probe_start lig_probe_stop lig_probe_copy lig_probe_sequence mip_scan_start_position mip_scan_stop_position scan_target_sequence mip_sequence feature_start_position feature_stop_position probe_strand failure_flags mip_name 1:6208789-6209033/16,27/- 0.426981 1 6209018 6209033 9 TCACTCACTGCACTTC 6208789 6208815 1 GCCGCGTGTCACTGCGCGTGTTTGTCC 6208816 6209017 TGGGGCACGTCGCGGCTTCGCTGACCCAGGGCCACGATGTCGTGGCGCGCGAACATGCGTGCTCGGTGCGTCTCGTCGCGGCAGCGCGCGCATAGGGGCTGTCCGCACGTGTTGCAGAAGTACGTGGTCTCCACGTCCTGCGGGCCGAGCGCGGGCTCAGGAGCGCCAGAGCCCGACCGCGGCCAGCGCGGGAACCGCAGCC GCCGCGTGTCACTGCGCGTGTTTGTCCCTTCAGCTTCCCGATATCCGACGGTAGTGTNNNNNTCACTCACTGCACTTC 6208599 6209057 - 000 _0001 1:6208942-6209061/17,23/+ 0.688518 1 6208942 6208958 1 ACGAGACGCACCGAGCA 6209039 6209061 1 GCGGGGCCGGGGACTTGGGGGTG 6208959 6209038 CGCATGTTCGCGCGCCACGACATCGTGGCCCTGGGTCAGCGAAGCCGCGACGTGCCCCAGAAGTGCAGTGAGTGAGGCTT GCGGGGCCGGGGACTTGGGGGTGCTTCAGCTTCCCGATATCCGACGGTAGTGTNNNNNACGAGACGCACCGAGCA 6208599 6209057 + 000 _0002 1:6209023-6209212/16,29/+ 0.732048 1 6209023 6209038 14 GCAGTGAGTGAGGCTT 6209184 6209212 1 GCGACATGCAGAAGTGCGTACAGGGGACG 6209039 6209183 GCGGGGCCGGGGACTTGGGGGTGGGGGCGGGGCGGGCACTGACCGGAGCCCTCACCACCGCCCGCCGCCCCCGCAGCGCTGCACGCAGAGCCCTACCTCTTGTTCTCCACCGACAAGAAGTTGCTGTTGTGCATCCGCTGCTTCC GCGACATGCAGAAGTGCGTACAGGGGACGCTTCAGCTTCCCGATATCCGACGGTAGTGTNNNNNGCAGTGAGTGAGGCTT 6208599 6209057 + 000 _0003 1:6208716-6208835/27,18/+ 0.780029 1 6208716 6208742 1 TGGGTATATCAGAGCGCCAAGTGCCTG 6208818 6208835 1 CTGCGGTTCCCGCGCTGG 6208743 6208817 GATTACAGGAAAGGGCTGCGTTTAGCTGCGCACCCGGCCACGGCTGGGACAAACACGCGCAGTGACACGCGGCGG CTGCGGTTCCCGCGCTGGCTTCAGCTTCCCGATATCCGACGGTAGTGTNNNNNTGGGTATATCAGAGCGCCAAGTGCCTG 6208599 6209057 + 000 _0004 1:6208549-6208668/18,27/- 0.983333 1 6208651 6208668 4 GTGGAGGGGGGTGGGGGA 6208549 6208575 7 CAACAATTTGGGAGGCCGAGGCGGGCG 6208576 6208650 CGCGGGGAGAGGGCAGAAACTGCCTTTATAAAACATTTTACCGAGGCCGGGCGCGGTGGCTCACGCCTGTAATCC CAACAATTTGGGAGGCCGAGGCGGGCGCTTCAGCTTCCCGATATCCGACGGTAGTGTNNNNNGTGGAGGGGGGTGGGGGA 6208599 6209057 - 000 _0005 1:6208621-6208760/16,29/- 0.905824 1 6208745 6208760 8 CAGCCCTTTCCTGTAA 6208621 6208649 1 GCGGGGAGAGGGCAGAAACTGCCTTTATA 6208650 6208744 TCCAGGCACTTGGCGCTCTGATATACCCACTTTACAGAGGAGGGCACTGCGGCTCAGAGGCTGGGTAAGTAGGTCCGTGGAGGGGGGTGGGGGAC GCGGGGAGAGGGCAGAAACTGCCTTTATACTTCAGCTTCCCGATATCCGACGGTAGTGTNNNNNCAGCCCTTTCCTGTAA 6208599 6209057 - 000 _0006 1:8460475-8460614/16,29/+ 0.866721 1 8460475 8460490 6 AGGAAGATTTAGATGT 8460586 8460614 1 GCTTATTTGTATCTAGATTGTTCACCTCA 8460491 8460585 TTTAAAATTTATGAGCTTGTAAATAAATCCATGTACATGGCCAATTAAGGTTTATCACTACCACAGATTAACTATTTTTGGATAAAAATTTCAGA GCTTATTTGTATCTAGATTGTTCACCTCACTTCAGCTTCCCGATATCCGACGGTAGTGTNNNNNAGGAAGATTTAGATGT 8460227 8460530 + 000 _0007 1:8460209-8460328/19,25/+ 0.980371 1 8460209 8460227 1 TCAGATGCCTAGCTTGAAA 8460304 8460328 1 CTGGGGAAAGACACCCTGCAAATAG 8460228 8460303 AGAGTGAACAATGAAAACAATGTTTTCTCAAGCAGACATTCCAAAAAGGGCATAACAAAGGCATCTGGAGATGCTG CTGGGGAAAGACACCCTGCAAATAGCTTCAGCTTCCCGATATCCGACGGTAGTGTNNNNNTCAGATGCCTAGCTTGAAA 8460227 8460530 + 000 _0008 1:8460272-8460391/16,29/+ 0.981555 1 8460272 8460287 10 AAAGGGCATAACAAAG 8460363 8460391 1 GCCGCACGGGTTCACTGGATTACAAATAT 8460288 8460362 GCATCTGGAGATGCTGCTGGGGAAAGACACCCTGCAAATAGTTGTGTGTATTCTGTGTAAGTAATTCCTTGACCG GCCGCACGGGTTCACTGGATTACAAATATCTTCAGCTTCCCGATATCCGACGGTAGTGTNNNNNAAAGGGCATAACAAAG 8460227 8460530 + 000 _0009 1:8460304-8460423/16,29/- 0.971151 1 8460408 8460423 5 AATTGACATGAGATGG 8460304 8460332 1 ACAACTATTTGCAGGGTGTCTTTCCCCAG 8460333 8460407 CAAAGTAATTTTCTAAATATTTGTAATCCAGTGAACCCGTGCGGCCGGTCAAGGAATTACTTACACAGAATACAC ACAACTATTTGCAGGGTGTCTTTCCCCAGCTTCAGCTTCCCGATATCCGACGGTAGTGTNNNNNAATTGACATGAGATGG 8460227 8460530 - 000 _0010 1:8460358-8460477/21,24/- 0.971045 1 8460457 8460477 1 CCTTCAATTTAAAGCTCAGTC 8460358 8460381 1 TCCAGTGAACCCGTGCGGCCGGTC 8460382 8460456 TATCATAAATATAAATGAAAATCCTTCTTTCAAAATTGACATGAGATGGCAAAGTAATTTTCTAAATATTTGTAA TCCAGTGAACCCGTGCGGCCGGTCCTTCAGCTTCCCGATATCCGACGGTAGTGTNNNNNCCTTCAATTTAAAGCTCAGTC 8460227 8460530 - 000 _0011 1:8460417-8460556/18,27/+ 0.863295 1 8460417 8460434 3 GTCAATTTTGAAAGAAGG 8460530 8460556 1 GCCAATTAAGGTTTATCACTACCACAG 8460435 8460529 ATTTTCATTTATATTTATGATAGACTGAGCTTTAAATTGAAGGAAGATTTAGATGTTTTAAAATTTATGAGCTTGTAAATAAATCCATGTACATG GCCAATTAAGGTTTATCACTACCACAGCTTCAGCTTCCCGATATCCGACGGTAGTGTNNNNNGTCAATTTTGAAAGAAGG 8460227 8460530 + 000 _0012 1:12053241-12053445/21,24/+ 0.971193 1 12053241 12053261 14 GGTTCTTTTTTTTTTTCTTTT 12053422 12053445 1 CGCCACCAATATGTTCTTTCCTTG 12053262 12053421 TCTTTTTTTTTAGAGTCAGGGCCAGGCTGACTGTTATTCAGGCTGGAGTGCAGTGGCATAATCATGGCTCACTACAGCCTTGAACTCCTGGGCTCAAGCAATCTTCCCACCTCAGCCTCCTGAGTAGCTTGGACCGCAGGTGTGCGCCATGACGCCCGGC CGCCACCAATATGTTCTTTCCTTGCTTCAGCTTCCCGATATCCGACGGTAGTGTNNNNNGGTTCTTTTTTTTTTTCTTTT 12053291 12053668 + 000 _0013 1:12053382-12053501/16,27/- 0.963964 1 12053486 12053501 13 GCCAGGGTTCTTTCTG 12053382 12053408 1 GCGCACACCTGCGGTCCAAGCTACTCA 12053409 12053485 AGCCAGGCCTTCCGGCTCTGCAGGGGCCATTGAACTGAGCCAAGGAAAGAACATATTGGTGGCGGCCGGGCGTCATG GCGCACACCTGCGGTCCAAGCTACTCACTTCAGCTTCCCGATATCCGACGGTAGTGTNNNNNGCCAGGGTTCTTTCTG 12053291 12053668 - 000 _0014 1:12053438-12053677/16,29/- 0.950773 1 12053662 12053677 7 TGTGTGTTCTGGGGGT 12053438 12053466 1 GCAGGGGCCATTGAACTGAGCCAAGGAAA 12053467 12053661 CACTCTTGCATTTCAAGTGACTCCAAACAACGTCCCCAAAGCAGCAGCCCACCTTGTGTTTCCTTGGGGCCTGAGCCCGGCCACTGGCTGGCGTCCCACTCTCATGCTTGGCAGTGGAAACAGCAGCCACTGCCTTGGCTTGCACTGACACTGCACAGGCGCCAGGGTTCTTTCTGAGCCAGGCCTTCCGGCTCT GCAGGGGCCATTGAACTGAGCCAAGGAAACTTCAGCTTCCCGATATCCGACGGTAGTGTNNNNNTGTGTGTTCTGGGGGT 12053291 12053668 - 000 _0015 1:12053612-12053736/16,28/+ 0.983875 1 12053612 12053627 15 GGGCTGCTGCTTTGGG 12053709 12053736 1 GCACAGGCCATTTCTTGCTAAGCATTTA 12053628 12053708 GACGTTGTTTGGAGTCACTTGAAATGCAAGAGTGACCCCCAGAACACACAGGCCCCCCAGGAGGTGGATGTGGGGTAGACA GCACAGGCCATTTCTTGCTAAGCATTTACTTCAGCTTCCCGATATCCGACGGTAGTGTNNNNNGGGCTGCTGCTTTGGG 12053291 12053668 + 000 _0016 1:15427026-15427165/16,27/- 0.756016 1 15427150 15427165 7 GGAAGATCAGGAGGAA 15427026 15427052 1 GCAGAGAAGGACTGGGGGGCAGTGAGC 15427053 15427149 CTGCAGCGGGGAGGGAGGCGCGCGGTGTCAGGAAGGGAGGGAAGGAGGGGAGCCGGAGTCCCTGGCCGCACCCAGGCCCCAGCCTCAGGCCTCCCCT GCAGAGAAGGACTGGGGGGCAGTGAGCCTTCAGCTTCCCGATATCCGACGGTAGTGTNNNNNGGAAGATCAGGAGGAA 15426958 15427590 - 000 _0017 1:15426955-15427119/20,24/- 0.778302 1 15427100 15427119 18 GGAAGGGAGGGAAGGAGGGG 15426955 15426978 1 GCCCAACTGTACAATGGGAGGAGA 15426979 15427099 AGCCGGAGTCCCTGGCCGCACCCAGGCCCCAGCCTCAGGCCTCCCCTGCAGAGAAGGACTGGGGGGCAGTGAGCTGGGTCTCGCCCCTTGCTGCTCCCGTGAGCCCCTTCACTGGGCCTCT GCCCAACTGTACAATGGGAGGAGACTTCAGCTTCCCGATATCCGACGGTAGTGTNNNNNGGAAGGGAGGGAAGGAGGGG 15426958 15427590 - 000 _0018 1:15427180-15427304/16,26/+ 0.866219 1 15427180 15427195 5 GGGGAGCTTCAGGAGG 15427279 15427304 1 GCCAAGGTGAGGAGCCCAAGGGGTGC 15427196 15427278 ACAGCGGGCTGTGCGTGCTGGCCCGCCTCTCTGAGATCGACGTCTCCAGTGAGGGTGTCAAGGGGGCCAAGAGCTTCTTTGAG GCCAAGGTGAGGAGCCCAAGGGGTGCCTTCAGCTTCCCGATATCCGACGGTAGTGTNNNNNGGGGAGCTTCAGGAGG 15426958 15427590 + 000 _0019 1:15426932-15427051/16,28/+ 0.878445 1 15426932 15426947 7 TCCTGGGTGGCAGATG 15427024 15427051 1 CAGCTCACTGCCCCCCAGTCCTTCTCTG 15426948 15427023 AGTCATATCTCCTCCCATTGTACAGTTGGGCAGAGGCCCAGTGAAGGGGCTCACGGGAGCAGCAAGGGGCGAGACC CAGCTCACTGCCCCCCAGTCCTTCTCTGCTTCAGCTTCCCGATATCCGACGGTAGTGTNNNNNTCCTGGGTGGCAGATG 15426958 15427590 + 000 _0020 1:15427099-15427243/21,24/+ 0.918207 1 15427099 15427119 14 TCCCCTCCTTCCCTCCCTTCC 15427220 15427243 1 GCCTCTCTGAGATCGACGTCTCCA 15427120 15427219 TGACACCGCGCGCCTCCCTCCCCGCTGCAGTTCCTCCTGATCTTCCGCAAGGCGGCGGCCGGGGAGCTTCAGGAGGACAGCGGGCTGTGCGTGCTGGCCC GCCTCTCTGAGATCGACGTCTCCACTTCAGCTTCCCGATATCCGACGGTAGTGTNNNNNTCCCCTCCTTCCCTCCCTTCC 15426958 15427590 + 000 _0021 1:15427244-15427398/18,25/+ 0.943377 1 15427244 15427261 1 GTGAGGGTGTCAAGGGGG 15427374 15427398 1 GCTGAGGCTGCAGACAGAGATGGGA 15427262 15427373 CCAAGAGCTTCTTTGAGGCCAAGGTGAGGAGCCCAAGGGGTGCCCTGACCCACGCTCCAGGACAAGGGGACCCTGGGTTGGTGCGAAGTTAATAGGTCCCCTTCCCGTCCCT GCTGAGGCTGCAGACAGAGATGGGACTTCAGCTTCCCGATATCCGACGGTAGTGTNNNNNGTGAGGGTGTCAAGGGGG 15426958 15427590 + 000 _0022 1:15427329-15427528/16,29/- 0.926335 1 15427513 15427528 12 TCCCTGTCCCCTTTTC 15427329 15427357 1 CCTATTAACTTCGCACCAACCCAGGGTCC 15427358 15427512 AAGAGTACACCCCCCTCACCCACCCCCTTGGCGGCTGCCAAGGATCTCAGCCAGGAGTGGGAGAAGACAGAAGACAGAGCGTGTGGGCCTGGCCCAGCCTGGCAGGGAGTCAGCTCCCATCTCTGTCTGCAGCCTCAGCAGGGACGGGAAGGGGA CCTATTAACTTCGCACCAACCCAGGGTCCCTTCAGCTTCCCGATATCCGACGGTAGTGTNNNNNTCCCTGTCCCCTTTTC 15426958 15427590 - 000 _0023 1:15427487-15427611/21,19/+ 0.981515 1 15427487 15427507 1 GGGGTGGGTGAGGGGGGTGTA 15427593 15427611 1 GGCAGGCCCAGAAACACAG 15427508 15427592 CTCTTGAAAAGGGGACAGGGATTACCTTGAGGTGCCCTGGCCCTGGCACACAGAGCTGCTAACACAGAGGACTGGGCCTTAGGAG GGCAGGCCCAGAAACACAGCTTCAGCTTCCCGATATCCGACGGTAGTGTNNNNNGGGGTGGGTGAGGGGGGTGTA 15426958 15427590 + 000 _0024 1:18921334-18921458/16,29/+ 0.974998 1 18921334 18921349 5 GTGGTGGTGACAAGTG 18921430 18921458 1 GTGCTGTGCAAGCACTGCTGCTCCTGTTG 18921350 18921429 CCACGTTAAGGTATGAGCCCAGCACTTCGTGAAGACAGAGGTGGGAGGGACCACCACCCTGCCTGCATGCAAACTGTAAA GTGCTGTGCAAGCACTGCTGCTCCTGTTGCTTCAGCTTCCCGATATCCGACGGTAGTGTNNNNNGTGGTGGTGACAAGTG 18921365 18921991 + 000 _0025 1:18921399-18921603/18,25/- 0.980955 1 18921586 18921603 1 TGTGTTGGTTTGGGTAGG 18921399 18921423 1 GTTTGCATGCAGGCAGGGTGGTGGT 18921424 18921585 CTGTCGGGCATCGCAATGCTTAGCACAATAAAAGTTTGTTTCTTGTGGGTGCAAAGAACAGCCTGAGAGTGGAGCTGGCTGCAGCCTGGCTCCTAAGGACTGGCTTTGCTACTGCATCTTGCAGCAACAACAGGAGCAGCAGTGCTTGCACAGCACTTTACA GTTTGCATGCAGGCAGGGTGGTGGTCTTCAGCTTCCCGATATCCGACGGTAGTGTNNNNNTGTGTTGGTTTGGGTAGG 18921365 18921991 - 000 _0026 1:18921561-18921700/19,25/- 0.980169 1 18921682 18921700 1 TCGCTGTGTGTCTTTGGGT 18921561 18921585 1 CTGTCGGGCATCGCAATGCTTAGCA 18921586 18921681 TAGATGTTTATTTAACCTCTCCGAGCCTCAGTTTCCACTTCTGTAAAATGGAATGATAACACCTACGTAGGAGAGATCTGTGTTGGTTTGGGTAGG CTGTCGGGCATCGCAATGCTTAGCACTTCAGCTTCCCGATATCCGACGGTAGTGTNNNNNTCGCTGTGTGTCTTTGGGT 18921365 18921991 - 000 _0027 1:18921661-18921780/16,29/+ 0.980268 1 18921661 18921676 12 GAGAGGTTAAATAAAC 18921752 18921780 1 GTTCCCACTGATTTAGCGTTTACTATGTG 18921677 18921751 ATCTAACCCAAAGACACACAGCGAGTCAGCAGGTGGGGCTGTTTTATTACATTGAAACAAAACTCAATAAATACA GTTCCCACTGATTTAGCGTTTACTATGTGCTTCAGCTTCCCGATATCCGACGGTAGTGTNNNNNGAGAGGTTAAATAAAC 18921365 18921991 + 000 _0028 1:18921731-18921860/17,28/+ 0.982545 1 18921731 18921747 15 AAACAAAACTCAATAAA 18921833 18921860 1 GCCCGAAGCTGAATAGGAAACGCGGGCG 18921748 18921832 TACAGTTCCCACTGATTTAGCGTTTACTATGTGCCAAGCCCTGTTGTTCCAAGGGCTTCCACACCACTACTTTGACACGAGTACT GCCCGAAGCTGAATAGGAAACGCGGGCGCTTCAGCTTCCCGATATCCGACGGTAGTGTNNNNNAAACAAAACTCAATAAA 18921365 18921991 + 000 _0029 1:18921792-18921911/16,29/+ 0.975538 1 18921792 18921807 11 TGTTCCAAGGGCTTCC 18921883 18921911 1 GTTCAGTGGACCCCCGCCCTTAACTGCAG 18921808 18921882 ACACCACTACTTTGACACGAGTACTGCCCGAAGCTGAATAGGAAACGCGGGCGGGAGGGGAGAAGGCAAAGGAGG GTTCAGTGGACCCCCGCCCTTAACTGCAGCTTCAGCTTCCCGATATCCGACGGTAGTGTNNNNNTGTTCCAAGGGCTTCC 18921365 18921991 + 000 _0030 1:18921857-18922091/25,20/- 0.964397 1 18922067 18922091 1 CTTGTGCCTCTGGGCCTTGCTTTCT 18921857 18921876 1 TTGCCTTCTCCCCTCCCGCC 18921877 18922066 GCACCTGGGGATAATGACGGTGCCTACGTCATAGGTTGTTACGAGGATTGAATTAACTTCATGTAGAACAGTGCCTGGTACAAAGTAAGTCCCAGTGAAGGTGGTTCTGGAATTGGTAATATCATCCAGTCCCAGGGAACTGCTCCCACCCCTTCCTGCAGTTAAGGGCGGGGGTCCACTGAACCCTCCT TTGCCTTCTCCCCTCCCGCCCTTCAGCTTCCCGATATCCGACGGTAGTGTNNNNNCTTGTGCCTCTGGGCCTTGCTTTCT 18921365 18921991 - 000 _0031 1:18922339-18922533/17,28/- 0.984186 1 18922517 18922533 14 TGTGGGAGAGAGGAGGA 18922339 18922366 1 GCCATGTAGGGAGGGTAGCAGTGGGGTG 18922367 18922516 ATTTTCCTCTGTGTGTGCAAACAGTATCCGTTTTCTCTTGTTTCCAAAAGCCGGTGACGTAACCGGCTCTCCACCCCTCCCTCCCCTCTGGCCTATTTTTAGCTGGCCCTGACAGCATCCTAAAAGGGTTCCAGACTGCCCTGCTCCGAG GCCATGTAGGGAGGGTAGCAGTGGGGTGCTTCAGCTTCCCGATATCCGACGGTAGTGTNNNNNTGTGGGAGAGAGGAGGA 18922387 18922839 - 000 _0032 1:18922460-18922579/17,28/- 0.973149 1 18922563 18922579 20 AGGGAGAGAGTGTGTGT 18922460 18922487 1 GTTTTCTCTTGTTTCCAAAAGCCGGTGA 18922488 18922562 CCTCCAGGAGCCCTGGCTGGGCTGTCTCCTGTGGGAGAGAGGAGGAATTTTCCTCTGTGTGTGCAAACAGTATCC GTTTTCTCTTGTTTCCAAAAGCCGGTGACTTCAGCTTCCCGATATCCGACGGTAGTGTNNNNNAGGGAGAGAGTGTGTGT 18922387 18922839 - 000 _0033 1:18922516-18922765/17,27/+ 0.913151 1 18922516 18922532 17 TTCCTCCTCTCTCCCAC 18922739 18922765 1 GCCTAATCCAGCCAGGACCATCTCACT 18922533 18922738 AGGAGACAGCCCAGCCAGGGCTCCTGGAGGACACACACTCTCTCCCTCTCCCCCTTTTCTCCAGCCTTTCCCAGCCCCAGCATTAGCTGTTAGGCTGAGATCTGCGTGGGCTCCCGGGCCCGGACCTGGAGGGCAAGGGGCTGGGATTCCTTCCAGGGCTGGAGGGCACAGAGAAAGCTAAGAGGGGGCAGGGAGGGAACCTAAGG GCCTAATCCAGCCAGGACCATCTCACTCTTCAGCTTCCCGATATCCGACGGTAGTGTNNNNNTTCCTCCTCTCTCCCAC 18922387 18922839 + 000 _0034 1:18922695-18922819/17,28/+ 0.97101 1 18922695 18922711 14 AGGGCACAGAGAAAGCT 18922792 18922819 1 GCAACTGAAGCCGAGTGGTCAAGCCATT 18922712 18922791 AAGAGGGGGCAGGGAGGGAACCTAAGGGCCTAATCCAGCCAGGACCATCTCACTGAACCTCCCCTCATTGTACAGATGGG GCAACTGAAGCCGAGTGGTCAAGCCATTCTTCAGCTTCCCGATATCCGACGGTAGTGTNNNNNAGGGCACAGAGAAAGCT 18922387 18922839 + 000 _0035 1:18922753-18922882/18,25/- 0.977893 1 18922865 18922882 1 GGTGAGAGGTGGCCTGGG 18922753 18922777 1 GAGGGGAGGTTCAGTGAGATGGTCC 18922778 18922864 ACCGGACTCCTAGCCTTGCTCCTGATATACTGGGTGATGTGGGCAAATGGCTTGACCACTCGGCTTCAGTTGCCCCATCTGTACAAT GAGGGGAGGTTCAGTGAGATGGTCCCTTCAGCTTCCCGATATCCGACGGTAGTGTNNNNNGGTGAGAGGTGGCCTGGG 18922387 18922839 - 000 _0036 1:38138105-38138224/18,24/- 0.981586 1 38138207 38138224 2 GATTTTTATAGTGTGTGG 38138105 38138128 1 CGTGGTGGATCGTCTGTGGGTTTT 38138129 38138206 ACTGGGAGAATCAAAAGACTAAGAGTTATGGACTCAGAGGATAGGAGAGAACCAAGCTGAGCCAGTCGGAGATGTCCC CGTGGTGGATCGTCTGTGGGTTTTCTTCAGCTTCCCGATATCCGACGGTAGTGTNNNNNGATTTTTATAGTGTGTGG 38138128 38138837 - 000 _0037 1:38138159-38138373/17,27/- 0.9801 1 38138357 38138373 1 GTGGGATCTGCTTGGGG 38138159 38138185 1 AGAGTTATGGACTCAGAGGATAGGAGA 38138186 38138356 CCTTGTGTAGCTGAACCTTATTTATAGCTCTCCTCTGTCTGGTTCGTTTCCTCTAACTTCCCTGCAGAATGATATGAATGAAAATGACACTATTGACTATCTTGGTAACCATAAAAGACCTTATAGAAATAAGATTTTTATAGTGTGTGGACTGGGAGAATCAAAAGACTA AGAGTTATGGACTCAGAGGATAGGAGACTTCAGCTTCCCGATATCCGACGGTAGTGTNNNNNGTGGGATCTGCTTGGGG 38138128 38138837 - 000 _0038 1:38138324-38138478/16,29/- 0.983622 1 38138463 38138478 7 TGGGTGAGTTCGTGTG 38138324 38138352 1 GTGTAGCTGAACCTTATTTATAGCTCTCC 38138353 38138462 CACCTGTCTCTAGCATGACTGGGCATACATGTGCATAGGTATATGTCGTGTGTGTGTATTCTGTGCATGAGTAGTTTTAAAAGAACACAGTGGGATCTGCTTGGGGCCTT GTGTAGCTGAACCTTATTTATAGCTCTCCCTTCAGCTTCCCGATATCCGACGGTAGTGTNNNNNTGGGTGAGTTCGTGTG 38138128 38138837 - 000 _0039 1:38138422-38138591/16,29/- 0.981295 1 38138576 38138591 10 TCCAAAGACAGGCAAA 38138422 38138450 1 GCATGACTGGGCATACATGTGCATAGGTA 38138451 38138575 TCCCATAAAGGGCTTTTTTCTAAAACTGCTAAATTGTGCAAGCACATACATGCGTGTGTGTATGCAAGCAGCATGTGGACAAAGCATCCTGTGTGCATGGGTGAGTTCGTGTGCACCTGTCTCTA GCATGACTGGGCATACATGTGCATAGGTACTTCAGCTTCCCGATATCCGACGGTAGTGTNNNNNTCCAAAGACAGGCAAA 38138128 38138837 - 000 _0040 1:38138547-38138736/17,28/+ 0.965276 1 38138547 38138563 16 GCAGTTTTAGAAAAAAG 38138709 38138736 1 GCTCATGTGTGGGGAGCTTTGGAATTCC 38138564 38138708 CCCTTTATGGGATTTGCCTGTCTTTGGAGGGCCAAGAGCAGGCAGCAGTACTTGCTGTGGTGAGATGGGGGTACTGAAGCAGGCCAGCTCAGAGAACGCATTCCAAAGCCATGAACTGCAAGGCTGGGCACCTGGCCATCCATGA GCTCATGTGTGGGGAGCTTTGGAATTCCCTTCAGCTTCCCGATATCCGACGGTAGTGTNNNNNGCAGTTTTAGAAAAAAG 38138128 38138837 + 000 _0041 1:38138667-38138786/16,26/- 0.956598 1 38138771 38138786 12 TGGGTGGCTGCCTCTG 38138667 38138692 1 GCCCAGCCTTGCAGTTCATGGCTTTG 38138693 38138770 CCACTCAGGCCGGAGCTAAGCTCCTGTGTTGGCGGGAATTCCAAAGCTCCCCACACATGAGCTCATGGATGGCCAGGT GCCCAGCCTTGCAGTTCATGGCTTTGCTTCAGCTTCCCGATATCCGACGGTAGTGTNNNNNTGGGTGGCTGCCTCTG 38138128 38138837 - 000 _0042 1:38138723-38138912/16,29/- 0.962985 1 38138897 38138912 13 AAGGCACAAACCAGAA 38138723 38138751 1 GCTCCTGTGTTGGCGGGAATTCCAAAGCT 38138752 38138896 TGGTGAAGCTAGCTGGCTCTCCTCCAAAGAATGAGGGGTTTGGCCCTCAGATGACACCAAGAGACAGTCAGAGGAAGCTCTGAGAGTGGCCCGGCATTCCCAGTGCTGGCTGGGTGGCTGCCTCTGCCACTCAGGCCGGAGCTAA GCTCCTGTGTTGGCGGGAATTCCAAAGCTCTTCAGCTTCCCGATATCCGACGGTAGTGTNNNNNAAGGCACAAACCAGAA 38138128 38138837 - 000 _0043 1:39203858-39203987/22,23/+ 0.981669 1 39203858 39203879 4 TGGGTTGTTTCCAGTTTTTTAT 39203965 39203987 1 GTGAGATTGCTGGGTCCTCTGGT 39203880 39203964 ATTATGAATAATGCTGCTGCAAACATTCATATACAGGTCTTTGTGTGGATATACGTTTCTCTTTTTCTTGGATAGATACCTAGGA GTGAGATTGCTGGGTCCTCTGGTCTTCAGCTTCCCGATATCCGACGGTAGTGTNNNNNTGGGTTGTTTCCAGTTTTTTAT 39203908 39204737 + 000 _0044 1:39203919-39204053/16,29/+ 0.97522 1 39203919 39203934 6 TTTGTGTGGATATACG 39204025 39204053 1 GCACCTTTGGAGGCAGAGGCGGGAGGATT 39203935 39204024 TTTCTCTTTTTCTTGGATAGATACCTAGGAGTGAGATTGCTGGGTCCTCTGGTCTAAGGCCGGGCACAGTGGCACATGCCTGTAATCCCA GCACCTTTGGAGGCAGAGGCGGGAGGATTCTTCAGCTTCCCGATATCCGACGGTAGTGTNNNNNTTTGTGTGGATATACG 39203908 39204737 + 000 _0045 1:39203988-39204137/20,25/- 0.969034 1 39204118 39204137 22 CGCACCCAGCTAATTTTTAT 39203988 39204012 1 CATGTGCCACTGTGCCCGGCCTTAG 39204013 39204117 ATTTTTAGTAGAGATGGGGTTTCACCATGTTGGCCAAGCTGGTCTCGAACTCCTGACCTCAAGCAATCCTCCCGCCTCTGCCTCCAAAGGTGCTGGGATTACAGG CATGTGCCACTGTGCCCGGCCTTAGCTTCAGCTTCCCGATATCCGACGGTAGTGTNNNNNCGCACCCAGCTAATTTTTAT 39203908 39204737 - 000 _0046 1:39204085-39204219/25,19/+ 0.983072 1 39204085 39204109 38166 CCAACATGGTGAAACCCCATCTCTA 39204201 39204219 71577 GAGGCGGAGGTTGCAGTGA 39204110 39204200 CTAAAAATATAAAAATTAGCTGGGTGCGGTGGCATCCACCTGTAATCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATTGCTTCAACCCTA GAGGCGGAGGTTGCAGTGACTTCAGCTTCCCGATATCCGACGGTAGTGTNNNNNCCAACATGGTGAAACCCCATCTCTA 39203908 39204737 + 000 _0047 1:39204181-39204300/19,26/+ 0.97979 1 39204181 39204199 16 GGAGAATTGCTTCAACCCT 39204275 39204300 1 GCCAGACGGATTTTTTTAACCCTTGA 39204200 39204274 AGAGGCGGAGGTTGCAGTGAACTGATATCGTGCCTTCCAAAGTGCTGGGATTACAGCCATGAACCACTGCGCCCA GCCAGACGGATTTTTTTAACCCTTGACTTCAGCTTCCCGATATCCGACGGTAGTGTNNNNNGGAGAATTGCTTCAACCCT 39203908 39204737 + 000 _0048 1:39204242-39204456/16,28/- 0.986384 1 39204441 39204456 12 AAACCCTCCATACCCA 39204242 39204269 6 GCAGTGGTTCATGGCTGTAATCCCAGCA 39204270 39204440 CAACCCGGGAGGAGAAGCAAGGAGCCTGAACATCAGTCCAGGGAGGATACATACAGAGCAAGCTCCCATGAAGCAGACCTGACATCTAGGTGTGATGAAGATCAGCGAGGAGAGCAAACTGCTCATTTAGGGGGTACTTCTCAAGGGTTAAAAAAATCCGTCTGGCTGGGC GCAGTGGTTCATGGCTGTAATCCCAGCACTTCAGCTTCCCGATATCCGACGGTAGTGTNNNNNAAACCCTCCATACCCA 39203908 39204737 - 000 _0049 1:39204409-39204563/16,29/- 0.980359 1 39204548 39204563 17 AGCCAGAAGAAAAAAG 39204409 39204437 1 CCCGGGAGGAGAAGCAAGGAGCCTGAACA 39204438 39204547 TCACAGAAGCATTAGGGAACCTCTTGCGGGGAGAAAGCAAAGTACATGAGGATGTATGAGCACCACAAGTACCCTGGAGTTGTCAGAGGGCAAACCCTCCATACCCACAA CCCGGGAGGAGAAGCAAGGAGCCTGAACACTTCAGCTTCCCGATATCCGACGGTAGTGTNNNNNAGCCAGAAGAAAAAAG 39203908 39204737 - 000 _0050 1:39204518-39204637/16,29/- 0.981023 1 39204622 39204637 6 GGGAGGGTGTCAGAGG 39204518 39204546 1 CACAGAAGCATTAGGGAACCTCTTGCGGG 39204547 39204621 ACGTCACACTCTTAACTTTCCATTCCCAGCCTGCCTGCAAGGCCAGACTTCAGGATGTAGCCAGAAGAAAAAAGT CACAGAAGCATTAGGGAACCTCTTGCGGGCTTCAGCTTCCCGATATCCGACGGTAGTGTNNNNNGGGAGGGTGTCAGAGG 39203908 39204737 - 000 _0051 1:39204585-39204704/16,29/- 0.980417 1 39204689 39204704 7 TCAAACCTCTATCTTT 39204585 39204613 1 CTCTTAACTTTCCATTCCCAGCCTGCCTG 39204614 39204688 GGCATCCTCTGCTCAGCTTAAATAAACAAACCTCAGACCCTTCTACAAGAAGGGAGGGTGTCAGAGGACGTCACA CTCTTAACTTTCCATTCCCAGCCTGCCTGCTTCAGCTTCCCGATATCCGACGGTAGTGTNNNNNTCAAACCTCTATCTTT 39203908 39204737 - 000 _0052 1:39204644-39204798/19,26/+ 0.981497 1 39204644 39204662 2 TAGAAGGGTCTGAGGTTTG 39204773 39204798 1 GCTGGCCAGTTGTTTCCTGGGCTTTG 39204663 39204772 TTTATTTAAGCTGAGCAGAGGATGCCAAAGATAGAGGTTTGAGTCAGCTTGACACTGGCTTAGGCGCTCCTTTTCACTCTCCTTGTTCCTTCTTCCCTTTCCCCTCCCCC GCTGGCCAGTTGTTTCCTGGGCTTTGCTTCAGCTTCCCGATATCCGACGGTAGTGTNNNNNTAGAAGGGTCTGAGGTTTG 39203908 39204737 + 000 _0053 1:91836153-91836372/23,22/+ 0.962342 1 91836153 91836175 16 TGGAGAATCGTTTGAACCTGGGA 91836351 91836372 1 GCACTTGAAACACAGTATCTCG 91836176 91836350 GGCAGAGGTTGCGGTGAGCCGAGATTGCACCATTGCACTCCAGCCTGGGCAACAAGAGCAAAACTCCATCTCAAGGAAAATAAACAAATAAATAAATTTTAAAAAAAATTCAGATGTCATGAAGAAATAACCTAAAACTTAACAATTGCTAACTAAACAATAATGGAACAACAGA GCACTTGAAACACAGTATCTCGCTTCAGCTTCCCGATATCCGACGGTAGTGTNNNNNTGGAGAATCGTTTGAACCTGGGA 91836204 91836860 + 000 _0054 1:91836331-91836485/20,24/+ 0.981639 1 91836331 91836350 1 AACAATAATGGAACAACAGA 91836462 91836485 1 GCTACTCAGTGGCAGCCGTGGGAT 91836351 91836461 GCACTTGAAACACAGTATCTCGTTAGATCTTCAAAACAACCCAGGGAGATGGATATTATCTCCATTTTACAGAGGAGTACACTGTAAAATGTAGCAAACCGAGGTTACACA GCTACTCAGTGGCAGCCGTGGGATCTTCAGCTTCCCGATATCCGACGGTAGTGTNNNNNAACAATAATGGAACAACAGA 91836204 91836860 + 000 _0055 1:91836424-91836583/16,29/+ 0.97128 1 91836424 91836439 16 GGAGTACACTGTAAAA 91836555 91836583 1 GCAGTGAGGAGCATTTTCCTCTTAGATTG 91836440 91836554 TGTAGCAAACCGAGGTTACACAGCTACTCAGTGGCAGCCGTGGGATATGCACCCAGGCAGCTGGCTCTTAACGTCTATGCTCTAAAACGCTGCGCTCCATTAAGTTCTCCTGCTG GCAGTGAGGAGCATTTTCCTCTTAGATTGCTTCAGCTTCCCGATATCCGACGGTAGTGTNNNNNGGAGTACACTGTAAAA 91836204 91836860 + 000 _0056 1:91836507-91836631/16,28/- 0.972954 1 91836616 91836631 10 CATCAAATTTCAAAGG 91836507 91836534 1 GCGCAGCGTTTTAGAGCATAGACGTTAA 91836535 91836615 TTTAAGTACTATTTTAGGATATTCATAGAACCCAATCTAAGAGGAAAATGCTCCTCACTGCCAGCAGGAGAACTTAATGGA GCGCAGCGTTTTAGAGCATAGACGTTAACTTCAGCTTCCCGATATCCGACGGTAGTGTNNNNNCATCAAATTTCAAAGG 91836204 91836860 - 000 _0057 1:91836560-91836759/16,29/- 0.930021 1 91836744 91836759 2 TGAAGCTACTGCTTGG 91836560 91836588 1 GAACCCAATCTAAGAGGAAAATGCTCCTC 91836589 91836743 AAATAAGATTTGGAAGCTGAACTAACTTCTACAATTTGGTAAACTATAGTAAAGTTAACTCAGCATATATTATAAATACAATAGAAATATATAATTATATATAAAAAAGTTTCATCAAATTTCAAAGGTTTAAGTACTATTTTAGGATATTCATA GAACCCAATCTAAGAGGAAAATGCTCCTCCTTCAGCTTCCCGATATCCGACGGTAGTGTNNNNNTGAAGCTACTGCTTGG 91836204 91836860 - 000 _0058 1:91836723-91836922/16,29/+ 0.976267 1 91836723 91836738 12 TTCAGCTTCCAAATCT 91836894 91836922 1 GCCCTCCACTGTGGCAGTTTCCATTACTA 91836739 91836893 TATTTCCAAGCAGTAGCTTCAAAACACTGGAAGAATCTGGCTCAAAATCAGTTACAACATTTTGCCATGACAGTATAACACATACACGCTGCATTAGATATTTATATTTCTGCTAAATATCAGAGATGCTCAAGTTGGTGATTATGACAGAGCTG GCCCTCCACTGTGGCAGTTTCCATTACTACTTCAGCTTCCCGATATCCGACGGTAGTGTNNNNNTTCAGCTTCCAAATCT 91836204 91836860 + 000 _0059 1:112744369-112744503/20,20/+ 0.713255 1 112744369 112744388 1 GTGGGCGCGGCGTTCGGGGT 112744484 112744503 1 GCGGAGGCCTGCAGCTGTGA 112744389 112744483 CCTCCGGGAGCAGGTGCGAAGGACGTGTCTGGAGTCTGTCGTCTGGACCTCTGGCCTCTGGGTGCGCAGCAACCCCTCGCGGCAGGATTGCAACC GCGGAGGCCTGCAGCTGTGACTTCAGCTTCCCGATATCCGACGGTAGTGTNNNNNGTGGGCGCGGCGTTCGGGGT 112744281 112744639 + 000 _0060 1:112744284-112744423/16,26/+ 0.7238 1 112744284 112744299 3 TGGTGGCCCGCGGTGG 112744398 112744423 1 GCAGGTGCGAAGGACGTGTCTGGAGT 112744300 112744397 CCCGCGTCCATCGTGTCGGTCCCACCGACCCCGATTAACGCAGGTTCGAGATGCGGCGGCTTCCGCCGAGTGGGCGCGGCGTTCGGGGTCCTCCGGGA GCAGGTGCGAAGGACGTGTCTGGAGTCTTCAGCTTCCCGATATCCGACGGTAGTGTNNNNNTGGTGGCCCGCGGTGG 112744281 112744639 + 000 _0061 1:112744204-112744338/19,21/- 0.774973 1 112744320 112744338 1 GTTAATCGGGGTCGGTGGG 112744204 112744224 1 GCGGGGGTTGGGAAGGAGAAG 112744225 112744319 ACCGACACGATGGACGCGGGCCACCGCGGGCCACCAGGCCCTGGGAGCGAGAGAGGAGCCCGGCGGGCGAGAGCAGCTTAAGGCATGCGCCCGTC GCGGGGGTTGGGAAGGAGAAGCTTCAGCTTCCCGATATCCGACGGTAGTGTNNNNNGTTAATCGGGGTCGGTGGG 112744281 112744639 - 000 _0062 1:112744454-112744573/16,29/- 0.86704 1 112744558 112744573 16 ATCCAAAGTTGACACC 112744454 112744482 1 GTTGCAATCCTGCCGCGAGGGGTTGCTGC 112744483 112744557 ATTAGCCCGGGTGGACTGCGGGCCGCGAAGCCGGCGGAGGAGGCGCGAGTTTAGTCACAGCTGCAGGCCTCCGCG GTTGCAATCCTGCCGCGAGGGGTTGCTGCCTTCAGCTTCCCGATATCCGACGGTAGTGTNNNNNATCCAAAGTTGACACC 112744281 112744639 - 000 _0063 1:112744505-112744724/16,29/- 0.945296 1 112744709 112744724 15 AAAAAGTAAGAAGGCA 112744505 112744533 1 GCGAAGCCGGCGGAGGAGGCGCGAGTTTA 112744534 112744708 TAGCTTTCCACCGAGCTTCAATTTGAACAAACAATATCTGTAGCTTTTGTGCCTTCCCATGTGTACACCCGCAGGACCCTGGGCCTTCCTGCGTGGAGACTTTCCCGGGTGCCACAGGGCCCGGCATTGAGAGGAATCCAAAGTTGACACCATTAGCCCGGGTGGACTGCGGGCC GCGAAGCCGGCGGAGGAGGCGCGAGTTTACTTCAGCTTCCCGATATCCGACGGTAGTGTNNNNNAAAAAGTAAGAAGGCA 112744281 112744639 - 000 _0064 1:147540955-147541104/27,18/- 0.980851 1 147541078 147541104 4 TCTCTTCTCTCTCTCTCTCTTCTCTCT 147540955 147540972 1 AGCAGAGAGCCGCCTCCT 147540973 147541077 CTCTCTCAAGCAGCTCAGCTAGTTGCTGCTGCACTGGTGGAGTTAAGAGACAGGAAAAAGCCCAGGCTGAGTTGGGGGCAGGGAGAAAAAGAGAGGGAGAGCGAG AGCAGAGAGCCGCCTCCTCTTCAGCTTCCCGATATCCGACGGTAGTGTNNNNNTCTCTTCTCTCTCTCTCTCTTCTCTCT 147540972 147541287 - 000 _0065 1:147541040-147541229/16,29/+ 0.932272 1 147541040 147541055 1 ACCAGTGCAGCAGCAA 147541201 147541229 6 TGTGTGTGTGTGTGTGTGTGTGCCTGCGT 147541056 147541200 CTAGCTGAGCTGCTTGAGAGAGAGAGAGAAGAGAGAGAGAGAGAAGAGAGAGAGAGAGAGAGAGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTGTGTGTGTGTGTGTGTGTGTG TGTGTGTGTGTGTGTGTGTGTGCCTGCGTCTTCAGCTTCCCGATATCCGACGGTAGTGTNNNNNACCAGTGCAGCAGCAA 147540972 147541287 + 000 _0066 1:166884055-166884189/16,28/- 0.847735 1 166884174 166884189 16 GAGTCCTTCCTGAGGG 166884055 166884082 1 GCGGCCCTTGAGAGTCAACATAAGTCAA 166884083 166884173 ACAAGGGCCACCCGCGCCGCCCGCGCCGCCAGAGCCGGTGAGTTCCTGAACCTGAGAGAACCTAGGACGCACCTGGGCAGGTGCCTGGGTG GCGGCCCTTGAGAGTCAACATAAGTCAACTTCAGCTTCCCGATATCCGACGGTAGTGTNNNNNGAGTCCTTCCTGAGGG 166884078 166884782 - 000 _0067 1:166884114-166884283/16,27/+ 0.850766 1 166884114 166884129 8 TTCTCTCAGGTTCAGG 166884257 166884283 1 GCGGGTGTGGGAGGATTAGTTGGCTTT 166884130 166884256 AACTCACCGGCTCTGGCGGCGCGGGCGGCGCGGGTGGCCCTTGTCCCTCAGGAAGGACTCTCCCTGTGGTCACCCAACTCTAGGCGCTCACGGCCTCTCAGCTGGAAAACCCCGCCGCCTGCAGAAA GCGGGTGTGGGAGGATTAGTTGGCTTTCTTCAGCTTCCCGATATCCGACGGTAGTGTNNNNNTTCTCTCAGGTTCAGG 166884078 166884782 + 000 _0068 1:166884417-166884546/16,28/+ 0.856007 1 166884417 166884432 16 TAGAGGAAGAAGAGAC 166884519 166884546 1 GCCCGGGATCCCAAGGAGGGTCGTGGGT 166884433 166884518 GGCCCTGAGCGCAGCATCACCTCGGCCGGTTGGAGTCTGCCCGGCTGCCGCCAGGGGGTGATGCGCCCTCACCTTTCCTCCAGGAT GCCCGGGATCCCAAGGAGGGTCGTGGGTCTTCAGCTTCCCGATATCCGACGGTAGTGTNNNNNTAGAGGAAGAAGAGAC 166884078 166884782 + 000 _0069 1:166884250-166884369/27,18/- 0.882608 1 166884343 166884369 1 CCAGCTCTGCATTCTCGCTTCGTTTCT 166884250 166884267 1 CCCACACCCGCTTTCTGC 166884268 166884342 CGGACAACAGCCGCTTTAGTGCTAAGAGCAGCACCGTGCCGCCCGCCCATCCCGACCCCAAAGCCAACTAATCCT CCCACACCCGCTTTCTGCCTTCAGCTTCCCGATATCCGACGGTAGTGTNNNNNCCAGCTCTGCATTCTCGCTTCGTTTCT 166884078 166884782 - 000 _0070 1:166884389-166884513/16,28/- 0.896269 1 166884498 166884513 9 GGAGGAAAGGTGAGGG 166884389 166884416 1 GCGAAGGCAAGCGGTGCTGCTGCAGAGA 166884417 166884497 CGCATCACCCCCTGGCGGCAGCCGGGCAGACTCCAACCGGCCGAGGTGATGCTGCGCTCAGGGCCGTCTCTTCTTCCTCTA GCGAAGGCAAGCGGTGCTGCTGCAGAGACTTCAGCTTCCCGATATCCGACGGTAGTGTNNNNNGGAGGAAAGGTGAGGG 166884078 166884782 - 000 _0071 1:166884024-166884143/18,26/- 0.902692 1 166884126 166884143 1 AGAGCCGGTGAGTTCCTG 166884024 166884049 1 CCAAGACCGAACCAGCCGGCCTGAAA 166884050 166884125 AACCTGAGAGAACCTAGGACGCACCTGGGCAGGTGCCTGGGTGGCGGCCCTTGAGAGTCAACATAAGTCAACGAGG CCAAGACCGAACCAGCCGGCCTGAAACTTCAGCTTCCCGATATCCGACGGTAGTGTNNNNNAGAGCCGGTGAGTTCCTG 166884078 166884782 - 000 _0072 1:166884222-166884356/16,28/+ 0.877777 1 166884222 166884237 9 GCCTCTCAGCTGGAAA 166884329 166884356 1 GCGGCTGTTGTCCGAGAAACGAAGCGAG 166884238 166884328 ACCCCGCCGCCTGCAGAAAGCGGGTGTGGGAGGATTAGTTGGCTTTGGGGTCGGGATGGGCGGGCGGCACGGTGCTGCTCTTAGCACTAAA GCGGCTGTTGTCCGAGAAACGAAGCGAGCTTCAGCTTCCCGATATCCGACGGTAGTGTNNNNNGCCTCTCAGCTGGAAA 166884078 166884782 + 000 _0073 1:166884303-166884432/16,28/- 0.964696 1 166884417 166884432 16 GTCTCTTCTTCCTCTA 166884303 166884330 1 GCTTTAGTGCTAAGAGCAGCACCGTGCC 166884331 166884416 GCGAAGGCAAGCGGTGCTGCTGCAGAGACATTTCGCTCGCGCCGGGGCCAGCTCTGCATTCTCGCTTCGTTTCTCGGACAACAGCC GCTTTAGTGCTAAGAGCAGCACCGTGCCCTTCAGCTTCCCGATATCCGACGGTAGTGTNNNNNGTCTCTTCTTCCTCTA 166884078 166884782 - 000 _0074 1:166884499-166884643/16,29/+ 0.917191 1 166884499 166884514 9 CCTCACCTTTCCTCCA 166884615 166884643 1 GCCACCTGACGCTTGAGCATTTCTTCTGC 166884515 166884614 GGATGCCCGGGATCCCAAGGAGGGTCGTGGGTCTCCGCGTCCCAACCTGGAGCCTTGGCCCGGGATGATACCCTTGGCCACCGGCAGCAGGTCTCTGGTG GCCACCTGACGCTTGAGCATTTCTTCTGCCTTCAGCTTCCCGATATCCGACGGTAGTGTNNNNNCCTCACCTTTCCTCCA 166884078 166884782 + 000 _0075 1:166884579-166884723/16,29/- 0.975382 1 166884708 166884723 3 GTTATTGGAGGGTCTG 166884579 166884607 1 GACCTGCTGCCGGTGGCCAAGGGTATCAT 166884608 166884707 AAAGTGGCACCTTTGGACAACCAAGATATTTTATGAGTCCAAGGGGTAGGACTTCCCAGGGTCCGCAGAAGAAATGCTCAAGCGTCAGGTGGCCACCAGA GACCTGCTGCCGGTGGCCAAGGGTATCATCTTCAGCTTCCCGATATCCGACGGTAGTGTNNNNNGTTATTGGAGGGTCTG 166884078 166884782 - 000 _0076 1:166884683-166884917/19,22/- 0.981169 1 166884899 166884917 1 GGTGGGTGGTAGGGTGGGG 166884683 166884704 1 GTGGCACCTTTGGACAACCAAG 166884705 166884898 GAGAGGGTAAACTCTACAGGTGGCCTCTGTATGCCCTGCCTTTACACTCAACTGCTGTCAGGCCCCTTTGGTCCGCAGCTCCCAGGTTGTCCCCAAATGTGACAATTCGTCAATTTCTTCCTGTAGGTAACAACCCTGCCTGTAATATGTCAATGATTTTGAGTCTATCCCTGCCGTTATTGGAGGGTCTGAAA GTGGCACCTTTGGACAACCAAGCTTCAGCTTCCCGATATCCGACGGTAGTGTNNNNNGGTGGGTGGTAGGGTGGGG 166884078 166884782 - 000 _0077 1:181022840-181023044/20,25/- 0.767134 1 181023025 181023044 18 GAGAGAGAGAGAGAGATATA 181022840 181022864 1 GCCAGTGGTGCTGAGCGAGTGCTGG 181022865 181023024 TGCCCTGGTCACGTGAGCGGGGTGCGGAAGTCGTGTTTCAGGCGGCGTTCGTGATTGGCCGCGGCCGAGGGTCCCGGGGGTGGGGTCAGGCCCTCCGACGCTTCGGGAGGAGCCGGGACTGGAGGCTGCCGAGGGGGCCGGCGCCCGAGTCCGGGATTCG GCCAGTGGTGCTGAGCGAGTGCTGGCTTCAGCTTCCCGATATCCGACGGTAGTGTNNNNNGAGAGAGAGAGAGAGATATA 181022864 181023375 - 000 _0078 1:181022988-181023157/17,25/- 0.958271 1 181023141 181023157 6 TGGGGGGGGGGGGAGAG 181022988 181023012 1 GTGAGCGGGGTGCGGAAGTCGTGTT 181023013 181023140 AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAGAGAGAGGAGAGAGAGGAGAGAGAGGAGAGAGAGGAGAGAGAGGAGAGAGAGGAGAGAGAGAGAGAGAGAGAGATATATGCCCTGGTCAC GTGAGCGGGGTGCGGAAGTCGTGTTCTTCAGCTTCCCGATATCCGACGGTAGTGTNNNNNTGGGGGGGGGGGGAGAG 181022864 181023375 - 000 _0079 1:181023095-181023254/26,19/+ 0.982144 1 181023095 181023120 19 CCTCTCTCTCCTCTCTCTCTCTCTCT 181023236 181023254 1 GCCCTCTCCTCAAGCTTGA 181023121 181023235 CTCTCTCTCTCTCTCTCTCTCTCTCCCCCCCCCCCCAGTGGGCGGGGCTTACGCCTGCGTCCCTCGGCCCTGGAGGCGGAGCCCTCGGGGCGGTGGAGGTGGGCGGGCTTCTACA GCCCTCTCCTCAAGCTTGACTTCAGCTTCCCGATATCCGACGGTAGTGTNNNNNCCTCTCTCTCCTCTCTCTCTCTCTCT 181022864 181023375 + 000 _0080 1:181023212-181023336/16,29/+ 0.979128 1 181023212 181023227 12 GGTGGAGGTGGGCGGG 181023308 181023336 1 GCTGTAGTTGTACCTGATTTGCAAAATCC 181023228 181023307 CTTCTACAGCCCTCTCCTCAAGCTTGAGGGTGAGGAGTGGCTTGTTCCCTCAGAACTAGGCAGTCGGCTTTTCAGGATAA GCTGTAGTTGTACCTGATTTGCAAAATCCCTTCAGCTTCCCGATATCCGACGGTAGTGTNNNNNGGTGGAGGTGGGCGGG 181022864 181023375 + 000 _0081 1:181023283-181023407/20,25/- 0.984839 1 181023388 181023407 1 GTCGAGGACCAGATAGATTT 181023283 181023307 1 TTATCCTGAAAAGCCGACTGCCTAG 181023308 181023387 ATAAATTACATACTGTCAAAATTAAGTATTAAAAGTAGAGGAAAGGTAAGAGGATTTTGCAAATCAGGTACAACTACAGC TTATCCTGAAAAGCCGACTGCCTAGCTTCAGCTTCCCGATATCCGACGGTAGTGTNNNNNGTCGAGGACCAGATAGATTT 181022864 181023375 - 000 _0082 1:220882009-220882128/24,21/+ 0.976546 1 220882009 220882032 1 GGTGTATGTGCGAAGGGCTTTCTG 220882108 220882128 1 CTGGACACTGAACGGCCCTCT 220882033 220882107 AATGAGGGTGGAATCGACAGTTAACACGAAACAGTTTCAAGCCTTACGGGGACCCCCAGGCTGGCAGGTCAAGGA CTGGACACTGAACGGCCCTCTCTTCAGCTTCCCGATATCCGACGGTAGTGTNNNNNGGTGTATGTGCGAAGGGCTTTCTG 220882042 220882722 + 000 _0083 1:220882090-220882209/27,18/- 0.960487 1 220882183 220882209 1 TTGTACGTCTGCGGCATGGTGTCCTTC 220882090 220882107 1 TCCTTGACCTGCCAGCCT 220882108 220882182 GTGAGCACAGCATAGGGACCTGCCGCAGAACGGGAGCCAGAGGGAAGAAAGACAAGAGGGCCGTTCAGTGTCCAG TCCTTGACCTGCCAGCCTCTTCAGCTTCCCGATATCCGACGGTAGTGTNNNNNTTGTACGTCTGCGGCATGGTGTCCTTC 220882042 220882722 - 000 _0084 1:220882152-220882271/16,27/- 0.960636 1 220882256 220882271 13 TTTTCTCCAGGCCTTT 220882152 220882178 1 GCACAGCATAGGGACCTGCCGCAGAAC 220882179 220882255 CCTCTGCAGGTTGGAGAACACAGCGCGCGACCATGAACGCTTCCTTTTGTACGTCTGCGGCATGGTGTCCTTCGTGA GCACAGCATAGGGACCTGCCGCAGAACCTTCAGCTTCCCGATATCCGACGGTAGTGTNNNNNTTTTCTCCAGGCCTTT 220882042 220882722 - 000 _0085 1:220882218-220882337/24,21/+ 0.973362 1 220882218 220882241 1 GTTCATGGTCGCGCGCTGTGTTCT 220882317 220882337 1 TGGCGGCGATGCTGGGCCTCA 220882242 220882316 CCAACCTGCAGAGGAAAGGCCTGGAGAAAAGGTTTGAGATTCAGAAGTACGTGACCAAGCCGGACCGAAAGCAGC TGGCGGCGATGCTGGGCCTCACTTCAGCTTCCCGATATCCGACGGTAGTGTNNNNNGTTCATGGTCGCGCGCTGTGTTCT 220882042 220882722 + 000 _0086 1:220882273-220882517/16,29/- 0.921977 1 220882502 220882517 16 TCCTCTTCTCCTGCCT 220882273 220882301 1 GCTTGGTCACGTACTTCTGAATCTCAAAC 220882302 220882501 CAAGTTGCGTAGTCCACAAAGCCTCTTGAAAGTCAAGATCTTGCGTTTGCACCGCAGGAGGCCAGTCGGCCGGGATGGAGGGGACCTACCAGACTAGGCCGTGCGCTGCTGCCCGCCCGAGGGCGCTGTGCGCTGGAGCCAGAACTGCCTTACCTGTGCGTCCGTGAGGCCCAGCATCGCCGCCAGCTGCTTTCGGTCCG GCTTGGTCACGTACTTCTGAATCTCAAACCTTCAGCTTCCCGATATCCGACGGTAGTGTNNNNNTCCTCTTCTCCTGCCT 220882042 220882722 - 000 _0087 1:220882478-220882657/16,28/+ 0.973717 1 220882478 220882493 15 AGGCTTTGTGGACTAC 220882630 220882657 1 GCAAAAGGGCCGCTGGAAATAACACTGA 220882494 220882629 GCAACTTGAGGCAGGAGAAGAGGAGGGTGGAGATGGGGTGAGGGAGAAGGACCGAGAGAAGAGCTCATCCCCAAGATGTGTGTCAACAAGCACTGCATGTTTATTTTGGCCAACAGGCTAAAGAACCACGGAGAAA GCAAAAGGGCCGCTGGAAATAACACTGACTTCAGCTTCCCGATATCCGACGGTAGTGTNNNNNAGGCTTTGTGGACTAC 220882042 220882722 + 000 _0088 1:220882613-220882742/17,25/+ 0.982312 1 220882613 220882629 2 AAAGAACCACGGAGAAA 220882718 220882742 1 CCAAAGGCAAGAGATTGTTGTTGGG 220882630 220882717 GCAAAAGGGCCGCTGGAAATAACACTGATACACTCAACTGTAGTGCAATTCGCTGTAGGAGGCAGTTTATTTCAGAAAAGATAAAAAC CCAAAGGCAAGAGATTGTTGTTGGGCTTCAGCTTCCCGATATCCGACGGTAGTGTNNNNNAAAGAACCACGGAGAAA 220882042 220882722 + 000 _0089 1:220882625-220882749/20,25/- 0.981675 1 220882730 220882749 3 AAAAAAACCCAACAACAATC 220882625 220882649 1 ATTTCCAGCGGCCCTTTTGCTTTCT 220882650 220882729 TCTTGCCTTTGGGTTTTTATCTTTTCTGAAATAAACTGCCTCCTACAGCGAATTGCACTACAGTTGAGTGTATCAGTGTT ATTTCCAGCGGCCCTTTTGCTTTCTCTTCAGCTTCCCGATATCCGACGGTAGTGTNNNNNAAAAAAACCCAACAACAATC 220882042 220882722 - 000 _0090 1:237041903-237042062/18,22/+ 0.782092 1 237041903 237041920 1 GGAGGAAGGGGCGTCGTG 237042041 237042062 1 GTGGCGCTGGGCCTCGGGTTTG 237041921 237042040 CCGGCGGTTTTAAGCTCGGAAGGGGCAGGGGAATGAGCCCAGGGACCCCAGCGGGGCGCAGGTAGGAGGCTGTGCGCTCGCCGGGTGCGCTCCGGCCCCGATTCCCAGCGCAGCCAGTAA GTGGCGCTGGGCCTCGGGTTTGCTTCAGCTTCCCGATATCCGACGGTAGTGTNNNNNGGAGGAAGGGGCGTCGTG 237041719 237042101 + 000 _0091 1:237041694-237041813/19,26/+ 0.980825 1 237041694 237041712 1 TGCATCGATTATCTGCGAA 237041788 237041813 1 CCAGGTGTTGCGTAATCTCTACTTGG 237041713 237041787 AAGCATGGTACACTAAAACTAGATCTTGAAGAATTCCCATTTGATCATGAATAGAGGTAATCCACGTTTAAAATA CCAGGTGTTGCGTAATCTCTACTTGGCTTCAGCTTCCCGATATCCGACGGTAGTGTNNNNNTGCATCGATTATCTGCGAA 237041719 237042101 + 000 _0092 1:237041763-237041887/16,28/+ 0.977524 1 237041763 237041778 2 ATAGAGGTAATCCACG 237041860 237041887 1 GCGATCCGAAGTGCCGTGGAAGTTAGTG 237041779 237041859 TTTAAAATACCAGGTGTTGCGTAATCTCTACTTGGAGATTAGCCACCCCGTGCGCCCAGGTGAAAGATATCATTCTTCCGT GCGATCCGAAGTGCCGTGGAAGTTAGTGCTTCAGCTTCCCGATATCCGACGGTAGTGTNNNNNATAGAGGTAATCCACG 237041719 237042101 + 000 _0093 1:237041828-237041957/17,24/+ 0.947999 1 237041828 237041844 1 GTGCGCCCAGGTGAAAG 237041934 237041957 1 GCTCGGAAGGGGCAGGGGAATGAG 237041845 237041933 ATATCATTCTTCCGTGCGATCCGAAGTGCCGTGGAAGTTAGTGCCCTAGCCCAGTCCAGGAGGAAGGGGCGTCGTGCCGGCGGTTTTAA GCTCGGAAGGGGCAGGGGAATGAGCTTCAGCTTCCCGATATCCGACGGTAGTGTNNNNNGTGCGCCCAGGTGAAAG 237041719 237042101 + 000 _0094 1:237042009-237042148/18,23/- 0.911568 1 237042131 237042148 16 TGGGGGTGGGGTGTGGGG 237042009 237042031 1 GCGCTGGGAATCGGGGCCGGAGC 237042032 237042130 GCGGGCGGGGAGGAGCTCGGCGGCTCCCCGCTGCTGCAGGTAATCCGCAGCCCGCTCCTCCGGGCCGCCAAACCCGAGGCCCAGCGCCACTTACTGGCT GCGCTGGGAATCGGGGCCGGAGCCTTCAGCTTCCCGATATCCGACGGTAGTGTNNNNNTGGGGGTGGGGTGTGGGG 237041719 237042101 - 000 _0095 10:3437036-3437155/18,24/- 0.98369 10 3437138 3437155 1 ACATGCATAGAAGGTAGC 3437036 3437059 1 TTCTCCAATCTCCTTGAGAGACGG 3437060 3437137 ACAGAAGTGATGATAACTAAGTTGGGACAGAATTACATTCAAATTTATACAGTAAAGTGGAAGAAAGAACAATTACGC TTCTCCAATCTCCTTGAGAGACGGCTTCAGCTTCCCGATATCCGACGGTAGTGTNNNNNACATGCATAGAAGGTAGC 3437059 3437398 - 000 _0096 10:3437108-3437227/21,24/- 0.983158 10 3437207 3437227 1 AGAGAGAAATAGAGAGATGGG 3437108 3437131 1 GTGATGATAACTAAGTTGGGACAG 3437132 3437206 GGACGGGAAGGGGAGAAACCATTTATTATAGAACAATTTATCATCAAATTTACATGCATAGAAGGTAGCACAGAA GTGATGATAACTAAGTTGGGACAGCTTCAGCTTCCCGATATCCGACGGTAGTGTNNNNNAGAGAGAAATAGAGAGATGGG 3437059 3437398 - 000 _0097 10:3437178-3437332/16,29/- 0.980643 10 3437317 3437332 10 GGAGAAATGAAACAAT 3437178 3437206 1 GGACGGGAAGGGGAGAAACCATTTATTAT 3437207 3437316 CCTGCCAATAAAAGAATGCTCTGCACTAATAGAGGAGAGAGAGAGAGAGAGAGAGAGAGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAATAGAGAGATGGG GGACGGGAAGGGGAGAAACCATTTATTATCTTCAGCTTCCCGATATCCGACGGTAGTGTNNNNNGGAGAAATGAAACAAT 3437059 3437398 - 000 _0098 10:3437301-3437420/16,28/+ 0.980665 10 3437301 3437316 5 TTCTTTTATTGGCAGG 3437393 3437420 1 GCTTTTCTGGACAAACATTGAGCTTCCT 3437317 3437392 ATTGTTTCATTTCTCCAACACTGCATACCAGTGTTAGAGAAAGAATGTTAAAGTTTCAACAAAAGAGACTCTTAAT GCTTTTCTGGACAAACATTGAGCTTCCTCTTCAGCTTCCCGATATCCGACGGTAGTGTNNNNNTTCTTTTATTGGCAGG 3437059 3437398 + 000 _0099 10:3437317-3437481/16,29/+ 0.982439 10 3437317 3437332 10 ATTGTTTCATTTCTCC 3437453 3437481 1 GCCCTTTGGATGGCTACAGGGTTTTCTTC 3437333 3437452 AACACTGCATACCAGTGTTAGAGAAAGAATGTTAAAGTTTCAACAAAAGAGACTCTTAATGCTTTTCTGGACAAACATTGAGCTTCCTTTTAATTGTACATTCTCAGTTTCCTTCAAGCA GCCCTTTGGATGGCTACAGGGTTTTCTTCCTTCAGCTTCCCGATATCCGACGGTAGTGTNNNNNATTGTTTCATTTCTCC 3437059 3437398 + 000 _0100 10:7605919-7606058/16,29/- 0.981115 10 7606043 7606058 6 TGTGGGCACTCTGTGG 7605919 7605947 1 GCGCCAGGAAATCACAGAAAAGCCTAGTT 7605948 7606042 CTGTCATACAAAGAGACACTTGTCAGTATAGAGTTTGGGGTGCTCCGGCATCACCTGCTCAGATTGCAGCCTTGCTGTGAGCATCGGAAAGTGTG GCGCCAGGAAATCACAGAAAAGCCTAGTTCTTCAGCTTCCCGATATCCGACGGTAGTGTNNNNNTGTGGGCACTCTGTGG 7605956 7606584 - 000 _0101 10:7605995-7606244/22,23/- 0.979888 10 7606223 7606244 1 TGGGCTGGCTGGATTGAGTAGG 7605995 7606017 1 GTATAGAGTTTGGGGTGCTCCGG 7606018 7606222 AGCTCCGTTTCCAGTTCTTTGAGAAATCGCCAGACTGCTGTCCACAGTGACTGAAGTAGTTTACATTCCTACCGGCAGTGTATAAGCATTCCCTTTTCTCTGCAACGTTGCCCGCATCTGTTATAAAATGAGGTCATGTTATTGAAATGTGTAGTATCTCTGAATGTGGGCACTCTGTGGCTGTCATACAAAGAGACACTTGTCA GTATAGAGTTTGGGGTGCTCCGGCTTCAGCTTCCCGATATCCGACGGTAGTGTNNNNNTGGGCTGGCTGGATTGAGTAGG 7605956 7606584 - 000 _0102 10:7606202-7606366/24,20/- 0.981976 10 7606343 7606366 12 ACTGATGGTCATTTAGGTTGATTC 7606202 7606221 1 GCTCCGTTTCCAGTTCTTTG 7606222 7606342 CATGTCTTTGGTCTTGAGAACAGTGCTGCCATAAACATATGCATATGTGTGTCTTTATGGTAGAATGATTTCTATTCCTTTGGGTATATACCCAATAATGGGCTGGCTGGATTGAGTAGGA GCTCCGTTTCCAGTTCTTTGCTTCAGCTTCCCGATATCCGACGGTAGTGTNNNNNACTGATGGTCATTTAGGTTGATTC 7605956 7606584 - 000 _0103 10:7606327-7606461/16,26/+ 0.980181 10 7606327 7606342 3 CAAGACCAAAGACATG 7606436 7606461 3 GATCATGTCCTTTGGAGCAACATGGA 7606343 7606435 GAATCAACCTAAATGACCATCAGTGGTGGACTCGATAAAGAAAACGTGGTACAAATATACCATGGAATACTATGCAGCTATAAAAAAGTATAA GATCATGTCCTTTGGAGCAACATGGACTTCAGCTTCCCGATATCCGACGGTAGTGTNNNNNCAAGACCAAAGACATG 7605956 7606584 + 000 _0104 10:7606392-7606571/16,29/- 0.981113 10 7606556 7606571 18 TTCGTGTCCATGTGTA 7606392 7606420 3 GCTGCATAGTATTCCATGGTATATTTGTA 7606421 7606555 CTCAATGTTTAGCTCCCACTTATAAGTGAGGGTATACAGTATTTGTTTTTCAGTTCCTGGGTTAATTTGCTTAGGATAATGGCTCCCAGATCCATCCATGTTGCTCCAAAGGACATGATCTTATACTTTTTTATA GCTGCATAGTATTCCATGGTATATTTGTACTTCAGCTTCCCGATATCCGACGGTAGTGTNNNNNTTCGTGTCCATGTGTA 7605956 7606584 - 000 _0105 10:7606490-7606609/20,20/+ 0.980916 10 7606490 7606509 1 ATTAACCCAGGAACTGAAAA 7606590 7606609 1 GGCCTCTTGAGGGTGAGGGT 7606510 7606589 ACAAATACTGTATACCCTCACTTATAAGTGGGAGCTAAACATTGAGTACACATGGACACGAAGAAGTGAACAGACACTGG GGCCTCTTGAGGGTGAGGGTCTTCAGCTTCCCGATATCCGACGGTAGTGTNNNNNATTAACCCAGGAACTGAAAA 7605956 7606584 + 000 _0106 10:22335599-22335808/16,29/+ 0.445043 10 22335599 22335614 19 CTGGCCTTCCTCCTCC 22335780 22335808 1 GCGCAGACCTAAAGCACGCTTGACACCCC 22335615 22335779 GCGGCCGTCGACCCCCCTCGGCGCTCCGGGTGGACGGCTCCGGGGCGCGGCTCGTCCCTCGGGTGGTGCAGCCCCCGCGGCCCGAGACCCGGGGAGGGCCGGGGGTACTTTCTGCGAGGCGCCTTCCCCGCGGCTTCTGCCCGCGCCAAAGCCTGGTGGAATCCA GCGCAGACCTAAAGCACGCTTGACACCCCCTTCAGCTTCCCGATATCCGACGGTAGTGTNNNNNCTGGCCTTCCTCCTCC 22335202 22335676 + 000 _0107 10:22335163-22335377/16,28/- 0.694887 10 22335362 22335377 18 TCCCTTCCTCTCCTGG 22335163 22335190 1 GCCTTGTCCGGGGACCCATTTTGGCGTC 22335191 22335361 TTTTAGGGCGCACGGGGAGCTCCCATGTCCGAGAAGCTTCTGTGTTCTGGGGATCCGGCAGGCGCAGGCTCTGCAGGAAGCCGCCGCGTCCCGGCAGCTTTCGGAGGCGATGTCCCAGCCTCGGCCCACCCGCTCCTCTGCCCGGCCGGGGGCGCCGGCACTCCCAGGGTC GCCTTGTCCGGGGACCCATTTTGGCGTCCTTCAGCTTCCCGATATCCGACGGTAGTGTNNNNNTCCCTTCCTCTCCTGG 22335202 22335676 - 000 _0108 10:22335336-22335455/18,25/+ 0.967975 10 22335336 22335353 1 ATGGGAGCTCCCCGTGCG 22335431 22335455 1 TGGGCGACGGCGGGCGAGTCCTCTT 22335354 22335430 CCCTAAAACCAGGAGAGGAAGGGACGACTTGGGAAAAGGGACTGGGGAAACAGCGGAGAAGTGAAAGCGGCCTAAAA TGGGCGACGGCGGGCGAGTCCTCTTCTTCAGCTTCCCGATATCCGACGGTAGTGTNNNNNATGGGAGCTCCCCGTGCG 22335202 22335676 + 000 _0109 10:22335385-22335509/16,28/+ 0.972964 10 22335385 22335400 8 GGAAAAGGGACTGGGG 22335482 22335509 1 GCCATTTGGTGGCGGATCTCGGTAGTTC 22335401 22335481 AAACAGCGGAGAAGTGAAAGCGGCCTAAAATGGGCGACGGCGGGCGAGTCCTCTTTATCAGTGCAGCAGGCTGCCGGAGCC GCCATTTGGTGGCGGATCTCGGTAGTTCCTTCAGCTTCCCGATATCCGACGGTAGTGTNNNNNGGAAAAGGGACTGGGG 22335202 22335676 + 000 _0110 10:22335453-22335597/16,28/- 0.969487 10 22335582 22335597 13 GGGAAATTTGCATTTC 22335453 22335480 1 GCTCCGGCAGCCTGCTGCACTGATAAAG 22335481 22335581 GTAAAACCGCGGTTAAGAAATGACGATGCCACGTAGACAAGCCAGTTGTGACGTTCAGCACAACGTGCTACTGAACTACCGAGATCCGCCACCAAATGGCG GCTCCGGCAGCCTGCTGCACTGATAAAGCTTCAGCTTCCCGATATCCGACGGTAGTGTNNNNNGGGAAATTTGCATTTC 22335202 22335676 - 000 _0111 10:22335523-22335642/16,29/- 0.909917 10 22335627 22335642 1 CGGAGCGCCGAGGGGG 22335523 22335551 1 ACGTAGACAAGCCAGTTGTGACGTTCAGC 22335552 22335626 GTCGACGGCCGCGGAGGAGGAAGGCCAGGGGGAAATTTGCATTTCGTAAAACCGCGGTTAAGAAATGACGATGCC ACGTAGACAAGCCAGTTGTGACGTTCAGCCTTCAGCTTCCCGATATCCGACGGTAGTGTNNNNNCGGAGCGCCGAGGGGG 22335202 22335676 - 000 _0112 10:27745955-27746154/17,27/- 0.550132 10 27746138 27746154 15 TCTCCAATTTCTCTCCT 27745955 27745981 1 GACGCTTCCTCTCCACCCGCCCGGGAA 27745982 27746137 AAAGTGCGAAGGGAAAAGCCCCGTCTGCTCCACGACTGCAAGGCCGGCGGATCTGGGAGCCGCGCCCGGCTCCGGAGGACTCGGCGGGCCCGGGGCTCCCCGGCAGCGGCTCCTCTGCTAGGGGTTAACAGCAGCCCCCGCGGCCGGGCGGGCGCG GACGCTTCCTCTCCACCCGCCCGGGAACTTCAGCTTCCCGATATCCGACGGTAGTGTNNNNNTCTCCAATTTCTCTCCT 27745771 27746411 - 000 _0113 10:27745874-27746013/20,20/+ 0.665365 10 27745874 27745893 1 GGAACAGGAATAGCGAGGCC 27745994 27746013 1 GCCGCGGGGGCTGCTGTTAA 27745894 27745993 TTCTCATGTTTCCTGACTGCCGGTCCCAGCCGGCGAACATCCTGCGGGCGCGGTATCCACGTTCCCGGGCGGGTGGAGAGGAAGCGTCCGCGCCCGCCCG GCCGCGGGGGCTGCTGTTAACTTCAGCTTCCCGATATCCGACGGTAGTGTNNNNNGGAACAGGAATAGCGAGGCC 27745771 27746411 + 000 _0114 10:27745743-27745907/16,28/- 0.715054 10 27745892 27745907 7 AGGAAACATGAGAAGG 27745743 27745770 1 GCGCCTAGTCTCGAGGCGGGAGAGCCAG 27745771 27745891 CCTCGCTATTCCTGTTCCCGGGCGGCGCGCGCCGGGCTGGGTAAATAAAGCCGAGACGACGGCGGTGGCGGTGGTGAGCGCGCTGGAGCCCGCGTGGAGAACATGCGGCGGGGATGGGAGT GCGCCTAGTCTCGAGGCGGGAGAGCCAGCTTCAGCTTCCCGATATCCGACGGTAGTGTNNNNNAGGAAACATGAGAAGG 27745771 27746411 - 000 _0115 10:27745837-27745956/25,20/+ 0.728302 10 27745837 27745861 1 CTCGGCTTTATTTACCCAGCCCGGC 27745937 27745956 1 GCGGGCGCGGTATCCACGTT 27745862 27745936 GCGCGCCGCCCGGGAACAGGAATAGCGAGGCCTTCTCATGTTTCCTGACTGCCGGTCCCAGCCGGCGAACATCCT GCGGGCGCGGTATCCACGTTCTTCAGCTTCCCGATATCCGACGGTAGTGTNNNNNCTCGGCTTTATTTACCCAGCCCGGC 27745771 27746411 + 000 _0116 10:27746117-27746241/16,29/+ 0.932424 10 27746117 27746132 4 GGGCTTTTCCCTTCGC 27746213 27746241 1 GTGTCTTAGCTGGCCCGATTGCCGGAAAT 27746133 27746212 ACTTTAGGAGAGAAATTGGAGAAGCTGCCGGGAGCGCTCGGCTCCGGCTCCAGAAGCTGAGAGGCTGCGGTGCAAATCCC GTGTCTTAGCTGGCCCGATTGCCGGAAATCTTCAGCTTCCCGATATCCGACGGTAGTGTNNNNNGGGCTTTTCCCTTCGC 27745771 27746411 + 000 _0117 10:27746184-27746333/16,29/+ 0.971148 10 27746184 27746199 11 AGAAGCTGAGAGGCTG 27746305 27746333 1 GCTGGAGGGAAGTTAGAGCTCCGTTTTGC 27746200 27746304 CGGTGCAAATCCCGTGTCTTAGCTGGCCCGATTGCCGGAAATTTCACTGCGCGTGGCTAGGCGGGAGAGGCCACTGTGACGCGCCCTGTATTTTCCTCTCGATTA GCTGGAGGGAAGTTAGAGCTCCGTTTTGCCTTCAGCTTCCCGATATCCGACGGTAGTGTNNNNNAGAAGCTGAGAGGCTG 27745771 27746411 + 000 _0118 10:27746283-27746407/16,29/+ 0.986276 10 27746283 27746298 9 CCCTGTATTTTCCTCT 27746379 27746407 1 GCCTCTTTTCTGATGTCACTGGGCTTCTG 27746299 27746378 CGATTAGCTGGAGGGAAGTTAGAGCTCCGTTTTGCACCTACAGCCCTGGAGCGTATTGCGGGAAGTGCTAGTGCCCAGGA GCCTCTTTTCTGATGTCACTGGGCTTCTGCTTCAGCTTCCCGATATCCGACGGTAGTGTNNNNNCCCTGTATTTTCCTCT 27745771 27746411 + 000 _0119 10:27746308-27746442/16,29/- 0.981472 10 27746427 27746442 10 TGTGTGCCTGGCTTTG 27746308 27746336 1 GGTGCAAAACGGAGCTCTAACTTCCCTCC 27746337 27746426 ACTGAGACAACTAGGACCCCAGAAGCCCAGTGACATCAGAAAAGAGGCTCCTGGGCACTAGCACTTCCCGCAATACGCTCCAGGGCTGTA GGTGCAAAACGGAGCTCTAACTTCCCTCCCTTCAGCTTCCCGATATCCGACGGTAGTGTNNNNNTGTGTGCCTGGCTTTG 27745771 27746411 - 000 _0120 10:31660461-31660640/16,28/- 0.982113 10 31660625 31660640 18 GCTTTGCTGTGTGTGT 31660461 31660488 1 ATAAACCTGCCACGGAGTTCCCTTAGAG 31660489 31660624 ACATTTGCAATCCAAATAAGGCATAAAAACATGCAAAGAGAACGGACAGCAGAGCCCGGGGGGCCTGGAAATGCTTCCTTGTCACTTCTTTGGCAAGGAGAATGATCTTCCACCATCATCTTACCTCCATCCTACC ATAAACCTGCCACGGAGTTCCCTTAGAGCTTCAGCTTCCCGATATCCGACGGTAGTGTNNNNNGCTTTGCTGTGTGTGT 31660488 31660944 - 000 _0121 10:31660590-31660709/16,29/- 0.982861 10 31660694 31660709 6 TTATTGTGGCTTCTTC 31660590 31660618 1 GCAATCCAAATAAGGCATAAAAACATGCA 31660619 31660693 ATAAAAGTGAACTGGAATAACAAATGCTGTCTGACATCTCAACCAGCAGGGACGCTTTGCTGTGTGTGTACATTT GCAATCCAAATAAGGCATAAAAACATGCACTTCAGCTTCCCGATATCCGACGGTAGTGTNNNNNTTATTGTGGCTTCTTC 31660488 31660944 - 000 _0122 10:31660647-31660771/16,29/- 0.982834 10 31660756 31660771 3 TTGGCTACTGGAGCTC 31660647 31660675 1 AACAAATGCTGTCTGACATCTCAACCAGC 31660676 31660755 CACATGTAAGAAATCAGCTTTCAAAGGCACTAAATAGGAACCAGAGTTATTGTGGCTTCTTCATAAAAGTGAACTGGAAT AACAAATGCTGTCTGACATCTCAACCAGCCTTCAGCTTCCCGATATCCGACGGTAGTGTNNNNNTTGGCTACTGGAGCTC 31660488 31660944 - 000 _0123 10:31660710-31660829/25,19/+ 0.980771 10 31660710 31660734 1 CTCTGGTTCCTATTTAGTGCCTTTG 31660811 31660829 1 CACAGGGGCCAGACCTCTT 31660735 31660810 AAAGCTGATTTCTTACATGTGGAGCTCCAGTAGCCAATTCAAGCTTCCTGAAATCACAATATACCCAAGGGGTAGA CACAGGGGCCAGACCTCTTCTTCAGCTTCCCGATATCCGACGGTAGTGTNNNNNCTCTGGTTCCTATTTAGTGCCTTTG 31660488 31660944 + 000 _0124 10:31660779-31660903/16,29/- 0.965276 10 31660888 31660903 16 CACTGTGTCTTTTTAT 31660779 31660807 1 ACCCCTTGGGTATATTGTGATTTCAGGAA 31660808 31660887 AAAGGAACACTTGCTTCCACATTAGACATTTACAGCGCCTCAGCAGTGTGGCCCTCCAAAGAGGTCTGGCCCCTGTGTCT ACCCCTTGGGTATATTGTGATTTCAGGAACTTCAGCTTCCCGATATCCGACGGTAGTGTNNNNNCACTGTGTCTTTTTAT 31660488 31660944 - 000 _0125 10:31660866-31660985/16,29/+ 0.98068 10 31660866 31660881 3 ATGTGGAAGCAAGTGT 31660957 31660985 1 CAGGTTATATAACTGTGCAGTGCAATCCC 31660882 31660956 TCCTTTATAAAAAGACACAGTGCCTCAAAGATTTAATAACTTAGAAAATGTTCATGAGATAGTATGTGAAAAATT CAGGTTATATAACTGTGCAGTGCAATCCCCTTCAGCTTCCCGATATCCGACGGTAGTGTNNNNNATGTGGAAGCAAGTGT 31660488 31660944 + 000 _0126 10:35639990-35640154/16,29/+ 0.799602 10 35639990 35640005 11 GTTGTCCAGGCTCTGG 35640126 35640154 1 GCGATGGCTTCGTTGCCCCACTTCATACC 35640006 35640125 TTGCCCACGTAGCAGATGCCCGCCACCGGGTCGCCGTCCACCGAGCTGAGCGCCAGCACCGCGATGGACTTGACGCTGGGCACAAGCCACGCGGCCAGGTGGAAGTACTGCGAGTAGCCG GCGATGGCTTCGTTGCCCCACTTCATACCCTTCAGCTTCCCGATATCCGACGGTAGTGTNNNNNGTTGTCCAGGCTCTGG 35639704 35640204 + 000 _0127 10:35639878-35640032/16,27/- 0.807926 10 35640017 35640032 16 GGTGGCGGGCATCTGC 35639878 35639904 1 GCATCCGCTCGGTCATCAAGCAACAGG 35639905 35640016 TACGTGGGCAACCAGAGCCTGGACAACCTGCGCGGCTTCGTGCTGGCGCCGCTGGTCATCTACCTCTTCATCGGCACCATGTTCCTGCTGGCCGGCTTCGTGTCCCTCTTCC GCATCCGCTCGGTCATCAAGCAACAGGCTTCAGCTTCCCGATATCCGACGGTAGTGTNNNNNGGTGGCGGGCATCTGC 35639704 35640204 - 000 _0128 10:35639727-35639921/16,25/+ 0.820305 10 35639727 35639742 1 GGGCAGTTGTGCGTGG 35639897 35639921 1 GCGGATGCGGAAGAGGGACACGAAG 35639743 35639896 CCTCCCAGCGCGGGCGGTTGTGCTGCTCGTAGAAGAGGCAGGCGACCACCACCGCGGCGGGCACGGTGTAGAGCACGGTGAACAGGCCCAGGCGGATCATCAGCTTCTCCAGCTTGTGCGTCTTGGTGGGGCCGTCCTGTTGCTTGATGACCGA GCGGATGCGGAAGAGGGACACGAAGCTTCAGCTTCCCGATATCCGACGGTAGTGTNNNNNGGGCAGTTGTGCGTGG 35639704 35640204 + 000 _0129 10:35639645-35639779/16,28/+ 0.837554 10 35639645 35639660 4 CACTAGGCACATGAAG 35639752 35639779 1 GCGGGCGGTTGTGCTGCTCGTAGAAGAG 35639661 35639751 TACTTGAGCATGAAGACGGCGTAGTCGGGCCTGCGTGCCTGGTCGGGCTGCAGGTCCCGCAGGCACGGGCAGTTGTGCGTGGCCTCCCAGC GCGGGCGGTTGTGCTGCTCGTAGAAGAGCTTCAGCTTCCCGATATCCGACGGTAGTGTNNNNNCACTAGGCACATGAAG 35639704 35640204 + 000 _0130 10:35639856-35639980/22,22/+ 0.954432 10 35639856 35639877 1 TTGTGCGTCTTGGTGGGGCCGT 35639959 35639980 1 TGACCAGCGGCGCCAGCACGAA 35639878 35639958 CCTGTTGCTTGATGACCGAGCGGATGCGGAAGAGGGACACGAAGCCGGCCAGCAGGAACATGGTGCCGATGAAGAGGTAGA TGACCAGCGGCGCCAGCACGAACTTCAGCTTCCCGATATCCGACGGTAGTGTNNNNNTTGTGCGTCTTGGTGGGGCCGT 35639704 35640204 + 000 _0131 10:35640088-35640237/16,29/- 0.952173 10 35640222 35640237 8 TGGTCTTCTTGCTGGT 35640088 35640116 1 GCAGTACTTCCACCTGGCCGCGTGGCTTG 35640117 35640221 CTACTTCTTCGGCATGGCCAGCTCCATCTGGTGGGTGATCTTGTCGCTCACATGGTTCCTGGCGGCCGGTATGAAGTGGGGCAACGAAGCCATCGCCGGCTACTC GCAGTACTTCCACCTGGCCGCGTGGCTTGCTTCAGCTTCCCGATATCCGACGGTAGTGTNNNNNTGGTCTTCTTGCTGGT 35639704 35640204 - 000 _0132 10:76676163-76676377/16,28/- 0.980775 10 76676362 76676377 13 GCCTGTTTTTGTTTGG 76676163 76676190 1 GCCTACAGGCTCATGACAAAGGCTTGCC 76676191 76676361 TTGAACTAGTCAGTAGGCATCTTTCATTTCATGCCAGATCAGTGACCCTAAGCCTGCCCTTCATCAGAAGGATCTGGCCTCTGCGGCATTCCCACCCTGTCTTCTCTGAGCTGTGCCTAATGGTCTCAAAGGCATTTTCCACTTTCCTGGACTGAGCCATGAACTGGAAGG GCCTACAGGCTCATGACAAAGGCTTGCCCTTCAGCTTCCCGATATCCGACGGTAGTGTNNNNNGCCTGTTTTTGTTTGG 76676194 76676741 - 000 _0133 10:76676330-76676459/16,29/+ 0.981677 10 76676330 76676345 5 ATGAAATGAAAGATGC 76676431 76676459 1 GCCCTTTTGGGTCCGGGCCAGGGAGGATT 76676346 76676430 CTACTGACTAGTTCAACCAAACAAAAACAGGCCTCTTGTGGTGGAGAGAAGTGAGGAGAATTCAGCTTTCCAGCTGCCCAGATCT GCCCTTTTGGGTCCGGGCCAGGGAGGATTCTTCAGCTTCCCGATATCCGACGGTAGTGTNNNNNATGAAATGAAAGATGC 76676194 76676741 + 000 _0134 10:76676388-76676617/16,28/+ 0.974571 10 76676388 76676403 16 GGAGAGAAGTGAGGAG 76676590 76676617 1 GCTCATATTAAGTGTGAAGGCTTGGGCA 76676404 76676589 AATTCAGCTTTCCAGCTGCCCAGATCTGCCCTTTTGGGTCCGGGCCAGGGAGGATTTAGCCGCCAGGGGCAGAGATGCTGACGTACTCATCTGCATTTCTGCCAACCCTGGGCTCTCAGTCAACCCCTTTTAAGGCATATTTGTGATGATTTGACTTCTCAGAGTCTGGAAGACCAGGGTTTTGTG GCTCATATTAAGTGTGAAGGCTTGGGCACTTCAGCTTCCCGATATCCGACGGTAGTGTNNNNNGGAGAGAAGTGAGGAG 76676194 76676741 + 000 _0135 10:76676571-76676745/19,26/+ 0.982462 10 76676571 76676589 1 GGAAGACCAGGGTTTTGTG 76676720 76676745 1 CCTTTAGGCATGTACAGTCTGGAGGG 76676590 76676719 GCTCATATTAAGTGTGAAGGCTTGGGCAAAGAATCTACTTCAGCAATATGGTTTATTCCCCATTTGTGAATTCAATCATCATTTATTGAACATTGGCTTTGAACAAAAATGAACAAAATTCAATTCTTTC CCTTTAGGCATGTACAGTCTGGAGGGCTTCAGCTTCCCGATATCCGACGGTAGTGTNNNNNGGAAGACCAGGGTTTTGTG 76676194 76676741 + 000 _0136 10:76676675-76676794/16,28/+ 0.981651 10 76676675 76676690 8 TTGAACATTGGCTTTG 76676767 76676794 1 GCAACTGCAATTGCAGAACATGACGATG 76676691 76676766 AACAAAAATGAACAAAATTCAATTCTTTCCCTTTAGGCATGTACAGTCTGGAGGGAGCATATGATTACATGCCCAA GCAACTGCAATTGCAGAACATGACGATGCTTCAGCTTCCCGATATCCGACGGTAGTGTNNNNNTTGAACATTGGCTTTG 76676194 76676741 + 000 _0137 10:77637125-77637339/16,28/+ 0.461763 10 77637125 77637140 9 AGGGAAGGGAAGGCGG 77637312 77637339 1 GCGTCCGCCAGAGCAAGATGATGAAGAG 77637141 77637311 CGAGGGGAAGGCAGGCGGGGATGGAGGGAGGCACGGCGCGGCGCGGAGCGAGGAGGTGGGCTGCAGGGGACGCCGAGAAGCGGTGGGGCTGGCGCAGAGGGCGGGCGCCCGGGGCGCGCGTTACCTTCGTCTTGCCCCCGCAGTGGCAGCACACGGTCCACAGGTACTTGA GCGTCCGCCAGAGCAAGATGATGAAGAGCTTCAGCTTCCCGATATCCGACGGTAGTGTNNNNNAGGGAAGGGAAGGCGG 77636252 77637264 + 000 _0138 10:77637024-77637173/17,28/- 0.337633 10 77637157 77637173 8 TGCCTCCCTCCATCCCC 77637024 77637051 1 GCTCCGGGACGCGGACGCTCAATCCTGT 77637052 77637156 GCCTGCCTTCCCCTCGCCGCCTTCCCTTCCCTCGGCTCTCCCGGTGCTCTCGGATCGGGGCAGCGGGCGGCGCGCCGGGGGTGAGGAGTTGCCCCCAGCCAGTGC GCTCCGGGACGCGGACGCTCAATCCTGTCTTCAGCTTCCCGATATCCGACGGTAGTGTNNNNNTGCCTCCCTCCATCCCC 77636252 77637264 - 000 _0139 10:77636882-77637081/16,27/- 0.856802 10 77637066 77637081 2 CGGGGGTGAGGAGTTG 77636882 77636908 1 GCTGGGGGCAGCTGGGTGCGTGTTTTG 77636909 77637065 CCCCCAGCCAGTGCGCTCCGGGACGCGGACGCTCAATCCTGTCCTCTTGTTTATTGTAGGGTTGTTGGCGGCTGCGGCTGGGGCCGGGGTCGGGGACTCACAGGCTCGGGTGCCGTGGTGCGGGGTGGGGACAGCCAACTCAGCGGGGACGGAGGAA GCTGGGGGCAGCTGGGTGCGTGTTTTGCTTCAGCTTCCCGATATCCGACGGTAGTGTNNNNNCGGGGGTGAGGAGTTG 77636252 77637264 - 000 _0140 10:77636786-77636915/23,18/+ 0.842318 10 77636786 77636808 1 CCCACGAACTCATCTCCCCAACA 77636898 77636915 7 CTGCCCCCAGCTTCCTCC 77636809 77636897 GGTTCCTAAAGTATGGGCGGATGTGCTCCCTCTCGCCCACCGCCAGGAGCCGAGCCCCGGCAGGTGAGCGGTGCAAAACACGCACCCAG CTGCCCCCAGCTTCCTCCCTTCAGCTTCCCGATATCCGACGGTAGTGTNNNNNCCCACGAACTCATCTCCCCAACA 77636252 77637264 + 000 _0141 10:77636372-77636536/16,29/- 0.894612 10 77636521 77636536 12 CCTCTGTTCCTTTGCC 77636372 77636400 1 GTCGTCGGCTTTAGCTATTCCTGGTGCAG 77636401 77636520 CCCAGGCCACCCACTTTGGGTCCCCGGAAATGCCACCAGCAGCGCGGAGCTGGAGCGGGAGTCCGCCTGAGGCCGCGGTTTTACGCGGAGCGTCTTCCCTGGCGCTCGAGGTGGCTAGAT GTCGTCGGCTTTAGCTATTCCTGGTGCAGCTTCAGCTTCCCGATATCCGACGGTAGTGTNNNNNCCTCTGTTCCTTTGCC 77636252 77637264 - 000 _0142 10:77636213-77636342/16,29/+ 0.976111 10 77636213 77636228 15 TTCTTTTTTATTCTGC 77636314 77636342 1 GCAGTGAGCCTAGCAACCATACATCGAAG 77636229 77636313 AGTTTTCTATCAGTGTCGGGTCCCCCACTCCAGCCAGTGGCTGTGGGGAAGGGAAGACATCTCTAGGGACACGACTACAGACCAG GCAGTGAGCCTAGCAACCATACATCGAAGCTTCAGCTTCCCGATATCCGACGGTAGTGTNNNNNTTCTTTTTTATTCTGC 77636252 77637264 + 000 _0143 10:77636268-77636402/16,29/+ 0.967647 10 77636268 77636283 13 GCTGTGGGGAAGGGAA 77636374 77636402 1 GCACCAGGAATAGCTAAAGCCGACGACAT 77636284 77636373 GACATCTCTAGGGACACGACTACAGACCAGGCAGTGAGCCTAGCAACCATACATCGAAGGTGTCGCCAGCCTCAGTGCCGGTGGGCGTCT GCACCAGGAATAGCTAAAGCCGACGACATCTTCAGCTTCCCGATATCCGACGGTAGTGTNNNNNGCTGTGGGGAAGGGAA 77636252 77637264 + 000 _0144 10:77636355-77636474/19,24/+ 0.898282 10 77636355 77636373 1 TCAGTGCCGGTGGGCGTCT 77636451 77636474 1 TCAGGCGGACTCCCGCTCCAGCTC 77636374 77636450 GCACCAGGAATAGCTAAAGCCGACGACATCTAGCCACCTCGAGCGCCAGGGAAGACGCTCCGCGTAAAACCGCGGCC TCAGGCGGACTCCCGCTCCAGCTCCTTCAGCTTCCCGATATCCGACGGTAGTGTNNNNNTCAGTGCCGGTGGGCGTCT 77636252 77637264 + 000 _0145 10:77636505-77636629/16,27/+ 0.982277 10 77636505 77636520 10 AAGTGGGTGGCCTGGG 77636603 77636629 1 GCGACCTCGACACATTCCAAAAGTGGC 77636521 77636602 GGCAAAGGAACAGAGGCCGAAGAACTTGGGGTATGTTCCACTAGAGCACCTAAGGGACGGAGTGGGAGGTTACATCAGATAT GCGACCTCGACACATTCCAAAAGTGGCCTTCAGCTTCCCGATATCCGACGGTAGTGTNNNNNAAGTGGGTGGCCTGGG 77636252 77637264 + 000 _0146 10:77636550-77636679/16,29/- 0.961533 10 77636664 77636679 12 GAGAGAAGTTGGGGAG 77636550 77636578 1 GTCCCTTAGGTGCTCTAGTGGAACATACC 77636579 77636663 ATCCATCCCACTATTGGGGGTAGCCCACGGGGCTGCCACTTTTGGAATGTGTCGAGGTCGCATATCTGATGTAACCTCCCACTCC GTCCCTTAGGTGCTCTAGTGGAACATACCCTTCAGCTTCCCGATATCCGACGGTAGTGTNNNNNGAGAGAAGTTGGGGAG 77636252 77637264 - 000 _0147 10:77636630-77636804/20,21/- 0.975117 10 77636785 77636804 1 GGGGAGATGAGTTCGTGGGG 77636630 77636650 1 TTGGGGGTAGCCCACGGGGCT 77636651 77636784 TCAGAAAGAAGGGAAAAATCCTTTGGGCAAGGGAGAGAATAATTTTGCACAAGGGAATCCCGGGGGAGGAGCATGGCCCGAGATAACAGGGGGACTTCGAGGGGCGAGAGAAGTTGGGGAGATCCATCCCACTA TTGGGGGTAGCCCACGGGGCTCTTCAGCTTCCCGATATCCGACGGTAGTGTNNNNNGGGGAGATGAGTTCGTGGGG 77636252 77637264 - 000 _0148 10:77636734-77636853/18,27/- 0.981465 10 77636836 77636853 1 TGGCGGTGGGCGAGAGGG 77636734 77636760 1 GGGCAAGGGAGAGAATAATTTTGCACA 77636761 77636835 AGCACATCCGCCCATACTTTAGGAACCTGTTGGGGAGATGAGTTCGTGGGGTCAGAAAGAAGGGAAAAATCCTTT GGGCAAGGGAGAGAATAATTTTGCACACTTCAGCTTCCCGATATCCGACGGTAGTGTNNNNNTGGCGGTGGGCGAGAGGG 77636252 77637264 - 000 _0149 10:77636856-77637005/23,18/- 0.379399 10 77636983 77637005 1 GTTGTTGGCGGCTGCGGCTGGGG 77636856 77636873 1 ACCTGCCGGGGCTCGGCT 77636874 77636982 CCGGGGTCGGGGACTCACAGGCTCGGGTGCCGTGGTGCGGGGTGGGGACAGCCAACTCAGCGGGGACGGAGGAAGCTGGGGGCAGCTGGGTGCGTGTTTTGCACCGCTC ACCTGCCGGGGCTCGGCTCTTCAGCTTCCCGATATCCGACGGTAGTGTNNNNNGTTGTTGGCGGCTGCGGCTGGGG 77636252 77637264 - 000 _0150 10:79390288-79390447/17,27/+ 0.981623 10 79390288 79390304 1 AATGGGGGCTAAGTCTG 79390421 79390447 1 GTGTTATATAGGGTTAGGGGCAGCATG 79390305 79390420 TAGGCTAACTCTACATGATAGGGTTGCTGTGAAGAGTAAATTAGTCTATGCAAAGGGATTAGAACAGTGCCTGGCACATAGAGAGCATTCAAAATGTTGGCCAGTATTGGTATCAT GTGTTATATAGGGTTAGGGGCAGCATGCTTCAGCTTCCCGATATCCGACGGTAGTGTNNNNNAATGGGGGCTAAGTCTG 79390304 79390970 + 000 _0151 10:79390363-79390507/17,28/- 0.97513 10 79390491 79390507 18 GGTGCTGGCAAGGATGT 79390363 79390390 1 GCTCTCTATGTGCCAGGCACTGTTCTAA 79390391 79390490 TTCAAGATCATTTCACCCGGGACTTCGCTGTTTCCCCTGCCCCCATGCTGCCCCTAACCCTATATAACACATGATACCAATACTGGCCAACATTTTGAAT GCTCTCTATGTGCCAGGCACTGTTCTAACTTCAGCTTCCCGATATCCGACGGTAGTGTNNNNNGGTGCTGGCAAGGATGT 79390304 79390970 - 000 _0152 10:79390445-79390564/22,23/- 0.914164 10 79390543 79390564 1 AACTCCCACCATGGGGTCATGG 79390445 79390467 1 TTCGCTGTTTCCCCTGCCCCCAT 79390468 79390542 CCAAGGAGGGGGCACAGCTCAGATGAGCCCAGGAGGGTGCTGGCAAGGATGTTTCAAGATCATTTCACCCGGGAC TTCGCTGTTTCCCCTGCCCCCATCTTCAGCTTCCCGATATCCGACGGTAGTGTNNNNNAACTCCCACCATGGGGTCATGG 79390304 79390970 - 000 _0153 10:79390508-79390657/16,29/+ 0.81521 10 79390508 79390523 11 CTCCTGGGCTCATCTG 79390629 79390657 1 GCCTGGGGAAGCTGTCAAGACATTCCCCT 79390524 79390628 AGCTGTGCCCCCTCCTTGGCCATGACCCCATGGTGGGAGTTCCCTCTGTGGGCACGGGCTCTGGCTCGACTGCTCAGCCCTGCTTGGCCTGCCACTGGGCGAGGA GCCTGGGGAAGCTGTCAAGACATTCCCCTCTTCAGCTTCCCGATATCCGACGGTAGTGTNNNNNCTCCTGGGCTCATCTG 79390304 79390970 + 000 _0154 10:79390589-79390753/16,27/- 0.919255 10 79390738 79390753 10 AAGAAGAAAACACCAC 79390589 79390615 1 GCAGGCCAAGCAGGGCTGAGCAGTCGA 79390616 79390737 TGGGCCTTGCCTTGCTGCAGGGAGTGGGGGAGGCCCTCCACCACAGTCAGCCCCAGCTGCAGAGTGTTTTCCGTCTGCCGAGGGGAATGTCTTGACAGCTTCCCCAGGCTCCTCGCCCAGTG GCAGGCCAAGCAGGGCTGAGCAGTCGACTTCAGCTTCCCGATATCCGACGGTAGTGTNNNNNAAGAAGAAAACACCAC 79390304 79390970 - 000 _0155 10:79390692-79390811/16,27/+ 0.903388 10 79390692 79390707 3 CTGTGGTGGAGGGCCT 79390785 79390811 1 GCTGGAGGCCGACAGGAAGCAGATGTG 79390708 79390784 CCCCCACTCCCTGCAGCAAGGCAAGGCCCAGTGGTGTTTTCTTCTTGAGGGGACCGGAGTCGGTAGGGGGAGCTGCA GCTGGAGGCCGACAGGAAGCAGATGTGCTTCAGCTTCCCGATATCCGACGGTAGTGTNNNNNCTGTGGTGGAGGGCCT 79390304 79390970 + 000 _0156 10:79390744-79390898/16,28/+ 0.902484 10 79390744 79390759 11 TTTTCTTCTTGAGGGG 79390871 79390898 1 GCTCTGTGGGGCAGGAGAAATAAACCAG 79390760 79390870 ACCGGAGTCGGTAGGGGGAGCTGCAGCTGGAGGCCGACAGGAAGCAGATGTGGCGGCCAGGAGAGTGGGGAAGTGGGGGGTTCTCCAGAGACGGAGGCCACACAGGTCAGG GCTCTGTGGGGCAGGAGAAATAAACCAGCTTCAGCTTCCCGATATCCGACGGTAGTGTNNNNNTTTTCTTCTTGAGGGG 79390304 79390970 + 000 _0157 10:79390825-79390979/16,29/+ 0.965815 10 79390825 79390840 13 TGGGGAAGTGGGGGGT 79390951 79390979 1 GCTCCCGACAGCTGGGGGATAGAGAGGCA 79390841 79390950 TCTCCAGAGACGGAGGCCACACAGGTCAGGGCTCTGTGGGGCAGGAGAAATAAACCAGCCCTCTCCACCGCGGGGCAACATGGGGAGCACCGCCGCTGGGCTCTTCAAAG GCTCCCGACAGCTGGGGGATAGAGAGGCACTTCAGCTTCCCGATATCCGACGGTAGTGTNNNNNTGGGGAAGTGGGGGGT 79390304 79390970 + 000 _0158 10:79390884-79391028/16,28/- 0.9659 10 79391013 79391028 20 CTCTATCTCCTCTCCT 79390884 79390911 1 GCGGTGGAGAGGGCTGGTTTATTTCTCC 79390912 79391012 GAGCTCCCAAGCTGGGAGGGGGTATGAGAGTGGTGCCTCTCTATCCCCCAGCTGTCGGGAGCCTTTGAAGAGCCCAGCGGCGGTGCTCCCCATGTTGCCCC GCGGTGGAGAGGGCTGGTTTATTTCTCCCTTCAGCTTCCCGATATCCGACGGTAGTGTNNNNNCTCTATCTCCTCTCCT 79390304 79390970 - 000 _0159 10:86363209-86363328/20,21/- 0.5985 10 86363309 86363328 1 TGGGCCGGAGGTGGGCGCTG 86363209 86363229 1 AGCCACTGCCTCCGGTCGGGC 86363230 86363308 TTCGCCCAGGAAAGGAGCGGAGCTGGGCCGGTCCGGCTGCGGGGAAATCCTGGCCTACGCCGGGGCCGCCCTTGTCCAC AGCCACTGCCTCCGGTCGGGCCTTCAGCTTCCCGATATCCGACGGTAGTGTNNNNNTGGGCCGGAGGTGGGCGCTG 86363195 86363533 - 000 _0160 10:86363285-86363404/16,29/+ 0.456283 10 86363285 86363300 5 AGCTCCGCTCCTTTCC 86363376 86363404 1 CTCCTCCAAACCTGGTGGAGGAGCGCTGC 86363301 86363375 TGGGCGAACAGCGCCCACCTCCGGCCCAGGCGGCGGCGCCTCCGCCCGCGGCGCGGACAGCGAGAGAGAAACCGG CTCCTCCAAACCTGGTGGAGGAGCGCTGCCTTCAGCTTCCCGATATCCGACGGTAGTGTNNNNNAGCTCCGCTCCTTTCC 86363195 86363533 + 000 _0161 10:86363145-86363264/16,25/+ 0.635699 10 86363145 86363160 14 GGGAAAGCAGAGGGGG 86363240 86363264 1 GCGGCCCCGGCGTAGGCCAGGATTT 86363161 86363239 TTGCTGTCGTGAACGCCCTCGCCTCGCACCTGTGGCGCCTGCCGCGGGGCCCGACCGGAGGCAGTGGCTGTGGACAAGG GCGGCCCCGGCGTAGGCCAGGATTTCTTCAGCTTCCCGATATCCGACGGTAGTGTNNNNNGGGAAAGCAGAGGGGG 86363195 86363533 + 000 _0162 10:86363356-86363495/16,27/+ 0.846564 10 86363356 86363371 12 GACAGCGAGAGAGAAA 86363469 86363495 1 GCCCGGGAGAAGGAGACAGGTCGGGCT 86363372 86363468 CCGGCTCCTCCAAACCTGGTGGAGGAGCGCTGCAGAGAAGCGCCGGGCTGAGGCTCTGGGGGCCGCGGGGCGCGAAACGCCGCGCCTACCAGGTTAT GCCCGGGAGAAGGAGACAGGTCGGGCTCTTCAGCTTCCCGATATCCGACGGTAGTGTNNNNNGACAGCGAGAGAGAAA 86363195 86363533 + 000 _0163 10:86363445-86363609/16,24/- 0.894698 10 86363594 86363609 19 GGTGTTTGGGGGTGGG 86363445 86363468 1 ATAACCTGGTAGGCGCGGCGTTTC 86363469 86363593 CGTGTCTGCGTGCCGGGTACCTGTATCGGGCGCACCTCCCCTGATCTCAGTGGCCCGGTGTTTTCCTCGCTTCGAGGTGAGGAGCGCCCAGCGGCTGGAGCCCGACCTGTCTCCTTCTCCCGGGC ATAACCTGGTAGGCGCGGCGTTTCCTTCAGCTTCCCGATATCCGACGGTAGTGTNNNNNGGTGTTTGGGGGTGGG 86363195 86363533 - 000 _0164 10:86632200-86632319/16,28/- 0.548957 10 86632304 86632319 16 CTGCAGCCCTCCAGCT 86632200 86632227 1 GCTGGACGTTTCCGAGGTCGCCCCGTGA 86632228 86632303 GCCCCACGCCCCAACCAACGCGACCCTTTGGCCCGGGGCTGGCTGCTCAGACGCGGCGCAGGGGGACAGGGCAGAC GCTGGACGTTTCCGAGGTCGCCCCGTGACTTCAGCTTCCCGATATCCGACGGTAGTGTNNNNNCTGCAGCCCTCCAGCT 86631965 86632517 - 000 _0165 10:86632287-86632406/16,24/+ 0.595285 10 86632287 86632302 4 TGGTTGGGGCGTGGGG 86632383 86632406 1 GGTTCCGCGCCCTGGAGCCCGAGT 86632303 86632382 CAGCTGGAGGGCTGCAGGTCCCCAGCGCCGCCTCCCGGGCAAGGGGCGGAGGCGCGGATCGCTGAAGTCAGCCCGCCCCT GGTTCCGCGCCCTGGAGCCCGAGTCTTCAGCTTCCCGATATCCGACGGTAGTGTNNNNNTGGTTGGGGCGTGGGG 86631965 86632517 + 000 _0166 10:86632120-86632244/16,29/- 0.592871 10 86632229 86632244 8 AGGGGGACAGGGCAGA 86632120 86632148 1 GCCCTCCAGTCTGAGAGCGGCCCTAGCGG 86632149 86632228 CGCTGGACGTTTCCGAGGTCGCCCCGTGAGCTAGGACAGCCGAGCGCGAACCCAGGCAAACGGCTCCCTGTATCCTCCGC GCCCTCCAGTCTGAGAGCGGCCCTAGCGGCTTCAGCTTCCCGATATCCGACGGTAGTGTNNNNNAGGGGGACAGGGCAGA 86631965 86632517 - 000 _0167 10:86632032-86632176/16,28/+ 0.714672 10 86632032 86632047 11 GGGTCAGAGAAATGCA 86632149 86632176 1 GCGGAGGATACAGGGAGCCGTTTGCCTG 86632048 86632148 GGGCTCTGGCCAGAGGGGCCCTCGGCAGCGCCCTTCGGTTCCCGTGAGGCCCAGGCAGCGGTTCCAGGCCTCCCGCTAGGGCCGCTCTCAGACTGGAGGGC GCGGAGGATACAGGGAGCCGTTTGCCTGCTTCAGCTTCCCGATATCCGACGGTAGTGTNNNNNGGGTCAGAGAAATGCA 86631965 86632517 + 000 _0168 10:86631960-86632094/16,29/+ 0.782424 10 86631960 86631975 17 CCACCACTTCTCTAAG 86632066 86632094 1 CCCTCGGCAGCGCCCTTCGGTTCCCGTGA 86631976 86632065 GCACCTGCCCTCCTCGTTAGCCCGCGGCCGCAGACTCCAAGGCCCCGGGATAGCTGGGGTCAGAGAAATGCAGGGCTCTGGCCAGAGGGG CCCTCGGCAGCGCCCTTCGGTTCCCGTGACTTCAGCTTCCCGATATCCGACGGTAGTGTNNNNNCCACCACTTCTCTAAG 86631965 86632517 + 000 _0169 10:86632364-86632558/21,19/- 0.88571 10 86632538 86632558 1 GGGGTGTGTGGGGGGATGGGG 86632364 86632382 1 AGGGGCGGGCTGACTTCAG 86632383 86632537 AATGGGTGGCAGGGTAAGCCTGTTTCTAAGGAGGGTTCTGGGGTATGAGAGACGGCGTTAAGCGCATCTTGGAGCCGCAGGCTGGGGGACTGGCCGCGGGCCAGCGCAGTGTGCGGCGGGCCCTGGGACGCACTCGGGCTCCAGGGCGCGGAACC AGGGGCGGGCTGACTTCAGCTTCAGCTTCCCGATATCCGACGGTAGTGTNNNNNGGGGTGTGTGGGGGGATGGGG 86631965 86632517 - 000 _0170 10:86631917-86632051/16,29/- 0.950682 10 86632036 86632051 9 GCCCTGCATTTCTCTG 86631917 86631945 1 GCTTTGCTGCCGGAACCACAGCAGTGGAA 86631946 86632035 ACCCCAGCTATCCCGGGGCCTTGGAGTCTGCGGCCGCGGGCTAACGAGGAGGGCAGGTGCCTTAGAGAAGTGGTGGATCCCATTAAATAG GCTTTGCTGCCGGAACCACAGCAGTGGAACTTCAGCTTCCCGATATCCGACGGTAGTGTNNNNNGCCCTGCATTTCTCTG 86631965 86632517 - 000 _0171 10:122128379-122128508/20,25/+ 0.980637 10 122128379 122128398 1 GGGAAGTGTTTATGATTTGA 122128484 122128508 1 GCTGGGACCTCATTTTCCAGTGGTG 122128399 122128483 AAAATAATTCCATTCCAAAGAGTTTAGGTGAAAATGCCATCACGTAGAATATGTGGGCAGATATCTTTTATTCCAGATCTTCTTT GCTGGGACCTCATTTTCCAGTGGTGCTTCAGCTTCCCGATATCCGACGGTAGTGTNNNNNGGGAAGTGTTTATGATTTGA 122128404 122128953 + 000 _0172 10:122128429-122128558/16,28/- 0.980692 10 122128543 122128558 7 TTGTCAGCCTCATTCC 122128429 122128456 1 GCCC

augustboyle commented 1 year ago

It looks like the last line may have been truncated, which would cause the script to crash.