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shendurelab / MMCA

The scripts used for performing data analysis in the MMCA project
MIT License
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Missing required file #2

Open nslaven13 opened 2 months ago

nslaven13 commented 2 months ago

Hey,

Wanted to run this pipeline with comparable combinatorial barcoding snRNA-seq (Sci-RNA-Seq3) but realized an input file is missing.

Script: Section_1_processing.R - line 17:

"mouse_gene = read.table("mouse.geneID.loc.txt", sep="\t", as.is=T)"

Missing file - mouse.geneID.loc.txt

I'm guessing this is quite a simple file with gene IDs and coordinates? Would you be able to upload it to perhaps the demo data folder? Or even email directly? (See email below)

Many thanks!

Neil Slaven Postdoctoral Research Scholar Mammalian Functional Genomics Lab Lawrence Berkeley National Lab (nslaven@lbl.gov)

ChengxiangQiu commented 2 months ago

Really sorry for that. The data could be downloaded from the below link: https://shendure-web.gs.washington.edu/content/members/MMCA/data/mouse.geneID.loc.txt Please let me know if any questions!

nslaven13 commented 2 months ago

No worries! Thanks for the fast response!