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shendurelab / MPRAflow

A portable, flexible, parallelized tool for complete processing of massively parallel reporter assay data
Apache License 2.0
31 stars 16 forks source link

Error with map_element_barcodes during Assocation: AttributeError: Can only use .str accessor with string values! #40

Closed townsk closed 2 years ago

townsk commented 3 years ago

Any thoughts? At first I thought it was an issue with the formatting of my label file, but even when I don't include a label file i get the same error. I wasn't having this issue before though - so I'm not sure what has changed.

Screen Shot 2021-04-20 at 6 19 07 PM
visze commented 3 years ago

Which version do you use?

But this function was not changed at all in the latest release. can you check the inputs if some of them are empty? In the working directory (path is below work dir in your picture)

townsk commented 3 years ago

This is the input -- all 9 args are listed.

Screen Shot 2021-04-20 at 6 18 33 PM

It also gave this deprecation warning for dtype for series changing from float64 to object...

Screen Shot 2021-04-21 at 7 51 16 AM
visze commented 3 years ago

sorry, to be precise: can you check by yourself the input files of this process. You can find them in the work directory.

E.g. are they empty ans so on. Also the log (also in the work directory) might be nice to understand whats going on and to see whats the output og the echos

townsk commented 3 years ago

Ah, gotcha it looks like the TD005294_MPRA-Library-A_assoc_basic-Labeled_coords_to_barcodes.pickle file only has a few entrees. And here are the .command.log and .command.err files too.

Screen Shot 2021-04-21 at 10 27 50 AM Screen Shot 2021-04-21 at 10 28 37 AM
visze commented 3 years ago

@townsk any news here. Is this still an issue?

visze commented 2 years ago

close because of inactivity.

please open again if needed