Many thanks for generously providing the raw count matrices!
However when I tried to QC the data and computed mitochondria gene percentage, I realized there was no mitchondria genes included in the count matrices across samples, I simply used the code as follow to check in R:
grep("^MT\-", (Features(seurat_obj)), value = TRUE, ignore.case = TRUE)
which returned none.
Did I miss something or there were particulars when you preprocessed the data that was not included in the paper?
I am looking forward to your response! Many thanks!
Hi,
Many thanks for generously providing the raw count matrices! However when I tried to QC the data and computed mitochondria gene percentage, I realized there was no mitchondria genes included in the count matrices across samples, I simply used the code as follow to check in R:
grep("^MT\-", (Features(seurat_obj)), value = TRUE, ignore.case = TRUE)
which returned none.
Did I miss something or there were particulars when you preprocessed the data that was not included in the paper? I am looking forward to your response! Many thanks!