I've tried installing your patched version, but I keep getting this error.
The standard ChIPQC can be installed with no errors.
✓ checking for file ‘/tmp/RtmpeVdiP2/remotes1c7059b5a299/shengqh-ChIPQC-a120b45/DESCRIPTION’ (1.7s)
─ preparing ‘ChIPQC’:
✓ checking DESCRIPTION meta-information ...
─ checking for LF line-endings in source and make files and shell scripts
─ checking for empty or unneeded directories
─ looking to see if a ‘data/datalist’ file should be added
─ building ‘ChIPQC_1.21.0.tar.gz’
* installing *source* package ‘ChIPQC’ ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
Error: package or namespace load failed for ‘DiffBind’ in .recacheSubclasses(def@className, def, env):
(converted from warning) undefined subclass "UnstitchedGPos" of class "GRanges_OR_NULL"; definition not updated
Error: package ‘DiffBind’ could not be loaded
Execution halted
ERROR: lazy loading failed for package ‘ChIPQC’
* removing ‘/home/r.vd.weide/R/x86_64-pc-linux-gnu-library/3.6/ChIPQC’
* restoring previous ‘/home/r.vd.weide/R/x86_64-pc-linux-gnu-library/3.6/ChIPQC’
Error: Failed to install 'ChIPQC' from GitHub:
(converted from warning) installation of package ‘/tmp/RtmpeVdiP2/file1c7029fd9f38/ChIPQC_1.21.0.tar.gz’ had non-zero exit status
version()
_
platform x86_64-pc-linux-gnu
arch x86_64
os linux-gnu
system x86_64, linux-gnu
status
major 3
minor 6.3
year 2020
month 02
day 29
svn rev 77875
language R
version.string R version 3.6.3 (2020-02-29)
nickname Holding the Windsock
Hi there,
I've tried installing your patched version, but I keep getting this error. The standard ChIPQC can be installed with no errors.
version()Can you help me figuring this out?
Many thanks, Robin