shengqh / ChIPQC

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Error: package ‘DiffBind’ could not be loaded #5

Open robinweide opened 3 years ago

robinweide commented 3 years ago

Hi there,

I've tried installing your patched version, but I keep getting this error. The standard ChIPQC can be installed with no errors.

✓  checking for file ‘/tmp/RtmpeVdiP2/remotes1c7059b5a299/shengqh-ChIPQC-a120b45/DESCRIPTION’ (1.7s)
─  preparing ‘ChIPQC’:
✓  checking DESCRIPTION meta-information ...
─  checking for LF line-endings in source and make files and shell scripts
─  checking for empty or unneeded directories
─  looking to see if a ‘data/datalist’ file should be added
─  building ‘ChIPQC_1.21.0.tar.gz’

* installing *source* package ‘ChIPQC’ ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
Error: package or namespace load failed for ‘DiffBind’ in .recacheSubclasses(def@className, def, env):
 (converted from warning) undefined subclass "UnstitchedGPos" of class "GRanges_OR_NULL"; definition not updated
Error: package ‘DiffBind’ could not be loaded
Execution halted
ERROR: lazy loading failed for package ‘ChIPQC’
* removing ‘/home/r.vd.weide/R/x86_64-pc-linux-gnu-library/3.6/ChIPQC’
* restoring previous ‘/home/r.vd.weide/R/x86_64-pc-linux-gnu-library/3.6/ChIPQC’
Error: Failed to install 'ChIPQC' from GitHub:
  (converted from warning) installation of package ‘/tmp/RtmpeVdiP2/file1c7029fd9f38/ChIPQC_1.21.0.tar.gz’ had non-zero exit status

version()

               _                           
platform       x86_64-pc-linux-gnu         
arch           x86_64                      
os             linux-gnu                   
system         x86_64, linux-gnu           
status                                     
major          3                           
minor          6.3                         
year           2020                        
month          02                          
day            29                          
svn rev        77875                       
language       R                           
version.string R version 3.6.3 (2020-02-29)
nickname       Holding the Windsock      

Can you help me figuring this out?

Many thanks, Robin