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shenlab-sinai
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SPEctRA
A Scalable Pipeline for RNA-seq Analysis
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Calculate RPKM automatically
#27
ipurusho
opened
9 years ago
0
Accomodate Tophat2 mapping without GTF file
#26
ipurusho
closed
9 years ago
0
added last line to readme
#25
eddielohyh
closed
9 years ago
0
adding comment to last line of README.md
#24
eddielohyh
closed
9 years ago
2
LSF branch not run
#23
lishen
opened
10 years ago
0
Code readability enhancement
#22
lishen
opened
10 years ago
0
Syntax error in dictionary key finder method
#21
ipurusho
opened
10 years ago
1
Execution error, config file parsing
#20
lishen
closed
10 years ago
9
Paired-End QC failes
#19
ipurusho
closed
10 years ago
0
Folders denote run number
#18
ipurusho
opened
10 years ago
0
Allow multiple fastq directory input
#17
ipurusho
opened
10 years ago
0
Strand option for tophat not working properly
#16
ipurusho
opened
10 years ago
0
Parse single end and paired end fastq.gz file names
#15
ipurusho
closed
10 years ago
0
Execute pipeline via config file
#14
ipurusho
closed
10 years ago
1
Initial output folder hierarchy
#13
ipurusho
closed
10 years ago
1
STAR sam file manipulation
#12
ipurusho
opened
10 years ago
0
Enable ISA tab compatibility
#11
ipurusho
opened
10 years ago
0
Allow multiple methods to count reads
#10
ipurusho
opened
10 years ago
0
Automated Reporting
#9
ipurusho
opened
10 years ago
0
Flexible execution of pipeline
#8
ipurusho
opened
10 years ago
3
FASTQC capability
#7
ipurusho
opened
10 years ago
0
Environment Setup
#6
ipurusho
closed
10 years ago
2
Quality control step
#5
ipurusho
closed
10 years ago
1
Project output directory
#4
ipurusho
closed
10 years ago
0
Genome Reference files
#3
ipurusho
opened
10 years ago
0
Choice of alignment method
#2
ipurusho
closed
10 years ago
2
Enable cluster and single server functionality
#1
ipurusho
closed
9 years ago
0