Closed GoogleCodeExporter closed 9 years ago
You need to use the "HepG2-longRNA-intron-enhancer.bed" in your configuration
file, so that it looks like this:
hesc.H3k4me3.1M.bam HepG2-longRNA-intron-enhancer.bed "H3K4me3"
hesc.H3k27me3.1M.bam HepG2-longRNA-intron-enhancer.bed "H3K27me3"
got it?
Original comment by shenli.sam
on 24 Sep 2014 at 3:36
Thanks a lot!
But my question has still not been answered- what becomes of the command
line?
See for using your region of interest it has to be flagged like -R bed -E
my regions.bed,followed by the other flags.
My question is if a configuration file is being used then does it become
like this :
$NGSPLOT/bin/ngs.plot.r -G hg19 -R bed -E HepG2-longRNA-intron-enhancer.bed
-C my configuration file.txt or simply $NGSPLOT/bin/ngs.plot.r -G hg19 -C
my configuration file.txt ? and where exactly does the use "-1" flag fit in
which has been explained in the config.example.txt file.
Original comment by amitpand...@gmail.com
on 25 Sep 2014 at 2:57
Just answered your question in another post.
Original comment by shenli.sam
on 25 Sep 2014 at 7:57
Original issue reported on code.google.com by
amitpand...@gmail.com
on 23 Sep 2014 at 10:20