replot.r fail on test

[EricDeveaud]

Hi,

while testing ngsplot-2.47.1 I had problems with replot.r

bic:/tmp > bic:/tmp > tar xf ~src/ngsplot/2.47.1.tar.gz bic:/tmp > export NGSPLOT=/tmp/ngsplot-2.47.1 bic:/tmp > export PATH=/tmp/ngsplot-2.47.1/bin/:$PATH
bic:/tmp > cd ngsplot-2.47.1/example bic:ngsplot-2.47.1/example > replot.r prof -I k4.test.zip -O k4.replot -SE 0 -MW 9 -H 0.3 Error in PlotVars(args.tbl, ls(), prof.misc) : object 'prof.misc' not found Execution halted

note that all ngs.plot.r described on example/bat_run.sh works OK

best regards

Eric

[lishen]

This has been answered somewhere else on the discussion forum. The example files are old. Those old zip files do not contain the new parameters.

Li

On Fri, May 29, 2015 at 12:13 PM, Eric Deveaud notifications@github.com wrote:

bic:/tmp > bic:/tmp > tar xf ~src/ngsplot/2.47.1.tar.gz bic:/tmp > export NGSPLOT=/tmp/ngsplot-2.47.1 bic:/tmp > export PATH=/tmp/ngsplot-2.47.1/bin/:$PATH

bic:/tmp > cd ngsplot-2.47.1/example bic:ngsplot-2.47.1/example > replot.r prof -I k4.test.zip -O k4.replot -SE 0 -MW 9 -H 0.3 Error in PlotVars(args.tbl, ls(), prof.misc) : object 'prof.misc' not found Execution halted

— Reply to this email directly or view it on GitHub https://github.com/shenlab-sinai/ngsplot/issues/47.

Li Shen, Ph.D. Computer Science Assistant Professor Department of Neuroscience Icahn School of Medicine at Mount Sinai New York, NY 10029 ################# ngs.plot - the coolest NGS plotting tool: https://code.google.com/p/ngsplot/ Want ChIP-seq differential analysis? Use: https://code.google.com/p/diffreps/

[EricDeveaud]

maybee it will be time to update the example files

it will be really helpfull for guys that test softwares before installation in production environment