search

shenlab-sinai / ngsplot

Quick mining and visualization of NGS data by integrating genomic databases
Other
252 stars 65 forks source link

[ngs.plot.r] average plots around TSS look different when i plot with "tss" and "genebody" #48

Open ajjeon opened 9 years ago

ajjeon commented 9 years ago

image image Hi Shen Lab,

ngsplot is very helpful and I would like to thank you first for developing it. I noticed an issue though. I plotted these plots with the same input data but with "-R genebody" and "-R tss" respectively, and realised that the plots right around TSS do not seem to correspond. Notice how the height of lines between the two plots differ. I understand that genebody plots according to the relative loci and not by an absolute scale, but it still seems perculiar to me as it should not affect the average plot heights. Thank you.

vidaletal commented 5 years ago

Have you sorted out? I found something similar as well..