Got the following message when running ngs.plot.r:
"Aligner for: ~/xxx.bam cannot be determined. Style of standard SAM mapping score will be used. Would you mind submitting an issue report to us on Github? This will benefit people using the same aligner."
Got the following message when running ngs.plot.r:
"Aligner for: ~/xxx.bam cannot be determined. Style of standard SAM mapping score will be used. Would you mind submitting an issue report to us on Github? This will benefit people using the same aligner."
The aligner was BWA-MEM, hope this helps!
Mark