1: In headerIndexBam(bam.list) :
Aligner for: x.bam cannot be determined. Style of
standard SAM mapping score will be used. Would you mind submitting an issue
report to us on Github? This will benefit people using the same aligner.
2: In headerIndexBam(bam.list) :
Aligner for: y.bam cannot be determined. Style of
standard SAM mapping score will be used. Would you mind submitting an issue
report to us on Github? This will benefit people using the same aligner.
Looks like hisat2 is not recognized:
1: In headerIndexBam(bam.list) : Aligner for: x.bam cannot be determined. Style of standard SAM mapping score will be used. Would you mind submitting an issue report to us on Github? This will benefit people using the same aligner. 2: In headerIndexBam(bam.list) : Aligner for: y.bam cannot be determined. Style of standard SAM mapping score will be used. Would you mind submitting an issue report to us on Github? This will benefit people using the same aligner.