I seem to be having some issues with the Tair10 genome.
When I was running the command:
ngs.plot.r -G Tair10 -R genebody -C MNase_config_clusters.txt -O MNase_test
I got back the following error:
Configuring variables...Error in CheckRegionAllowed(reg2plot, default.tbl) :
Unknown region specified. Must be one of: bed
Execution halted
I checked to make sure Tair10 was installed using:
jp-MBP: Desktop jp$ ngsplotdb.py list
And it returned:
ID Assembly Species EnsVer NPVer InstalledFeatures
Tair10 TAIR10 arabidopsis_thaliana 21.0 3.0
I tried to remove and reinstall it, but I went to remove it I got the error:
Removing genome...
Traceback (most recent call last):
File "/Users/jp/opt/anaconda3/envs/ngsplot/bin/ngsplotdb.py", line 669, in <module>
args.func(root_path, args)
File "/Users/jp/opt/anaconda3/envs/ngsplot/bin/ngsplotdb.py", line 528, in remove
shutil.rmtree(folder_to_rm)
File "/Users/jp/opt/anaconda3/envs/ngsplot/lib/python2.7/shutil.py", line 253, in rmtree
onerror(os.listdir, path, sys.exc_info())
File "/Users/jp/opt/anaconda3/envs/ngsplot/lib/python2.7/shutil.py", line 251, in rmtree
names = os.listdir(path)
OSError: [Errno 2] No such file or directory: '/Users/jp/opt/anaconda3/envs/ngsplot/share/r-ngsplot-2.63-7/database/Tair10
Hello,
I seem to be having some issues with the Tair10 genome.
When I was running the command:
ngs.plot.r -G Tair10 -R genebody -C MNase_config_clusters.txt -O MNase_test
I got back the following error:I checked to make sure Tair10 was installed using:
jp-MBP: Desktop jp$ ngsplotdb.py list
And it returned:I tried to remove and reinstall it, but I went to remove it I got the error:
Any help would be greatly appreciated.