Open Raoyugithub opened 2 years ago
Hi, I have installed the maize genomes, but Ig ot the following error code while while the script:
ngs.plot.r -G B73 -R genebody -C ../9_rep1_rmp.bam -O Kla_gene -T Arabi_4ac -L 300 -FL 300 Configuring variables... Using database: /public/home/qtxu/software/ngsplot/NGSPLOT/ngsplot/database/B73/B73.ensembl.genebody.protein_coding.RData Done Loading R libraries.....Done Analyze bam files and calculate coverageWarning message: 'isNotPrimaryRead' is deprecated. Use 'isSecondaryAlignment' instead. See help("Deprecated") .Done Plotting figures...Error in plotheat(reg.list, uniq.reg, enrichList, v.low.cutoff, go.algo, : object 'g.order' not found Execution halted
I have checked the genomes, it showed that the genome was sucessfully installed.
ngsplotdb.py list ID Assembly Species EnsVer NPVer InstalledFeatures AGPv3 AGPv3 zea_mays 21.0 3.0 exon,genebody,tss,tes B73 Zm-B73-REFERENCE-NAM-5.0 zea_mays 53.0 3.0 exon,genebody,tss,tes hg19 GRCh37 homo_sapiens 75.0 3.0 cgi,exon,genebody,tss,tes MSUv7 MSUv7 oryza_sativa 0.0 3.0 exon,genebody,tss,tes Rapdb IRGSP-1.0 oryza_sativa 52.0 3.0 exon,genebody,tss,tes Tair10 TAIR10 arabidopsis_thaliana 21.0 3.0 exon,genebody,tss,tes
What had went wrong? Could any one help me out? Thanks!!!
Hi, I have installed the maize genomes, but Ig ot the following error code while while the script:
I have checked the genomes, it showed that the genome was sucessfully installed.
What had went wrong? Could any one help me out? Thanks!!!