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shenwei356 / taxonkit

A Practical and Efficient NCBI Taxonomy Toolkit, also supports creating NCBI-style taxdump files for custom taxonomies like GTDB/ICTV
https://bioinf.shenwei.me/taxonkit
MIT License
361 stars 29 forks source link

Can I get kingdom using taxonkit? #43

Closed Lix1993 closed 3 years ago

Lix1993 commented 3 years ago

help message says reformat can only output superkingdom, can I get kingdom info using taxonkit?

Output format can be formated by flag --format, available placeholders:

    {k}: superkingdom
    {p}: phylum
    {c}: class
    {o}: order
    {f}: family
    {g}: genus
    {s}: species
    {t}: subspecies/strain

    {S}: subspecies
    {T}: strain
shenwei356 commented 3 years ago

Sorry, no.

Is this for #42 ?

Lix1993 commented 3 years ago

Thanks,

It's for #44, I wanna get microbes by filter out Metazoa and Viridiplantae